| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0403 |
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| Symbol | |
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| ID | 8131318 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 459277 |
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| End bp | 460860 |
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| Gene Length | 1584 bp |
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| Protein Length | 527 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644863681 |
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| Product | Sigma 54 interacting domain protein |
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| Protein accession | YP_003015995 |
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| Protein GI | 253686805 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG4650] Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCGTC GCGTCATCAT TGGTGTGCTG GGAACCACGT TGGACAAACG AGGTAAACGG
GAGAATCGCT GGACAAAATG GCGGCCTACC GTCGGCCTAT GCCAGCAGCC GGATTTTCCG
GTCGATCGAC TGGAGCTGCT GCATCAGTCA CGCAACGAGG GGATGGCACA GCAGGTGGCA
GAGGATATCG CCGTGGTGTC ACCCGCTACG CAGGTCACGC TTCAGACCGT TGAGTTACGC
GATCCTTGGA ATCTGGAAGA GGTCTACAGC GCCTTTCTGG ACTTTGCGAG CCGCTACCCG
TTCGATACTG AGAACGAAGA GTATTTCGTT CATATCACCA CGGGTACTCA CGTCGTGCAG
ATTTGCTGGT TCCTGCTGAC CGAAGCCCGC TACCTGCCCG CCAAGCTGCT GCAAACCGCA
CCGGGAGAGA AAGCGGATCG CCCCGCACCG CAGGGCATCT ATGCCGTTAT CGATCTGGAT
CTCAGCCGCT ACGCAACACT CACCAGCCGC TTCCAGCATG AGCAAGAGCG CTCGGTCTCG
TTCCTGAAAT CGGGCATAGA AACGCGCAAC AGCACGTTCA ACGCGCTGAT CGACCAGATT
GAACGTGTCG CGCTGCGTTC TACCGCGCCG ATGCTCCTGA CCGGCCCGAC CGGTGCGGGA
AAATCCTTTC TGGCCCAACG CATCTATCAG TTACGCCAGT CCCGCCATCT GGTCAGCGGT
CGGTTCGTCG CAGTTAACTG TGCCACGCTG CGCGGCGACA ACGCGATGTC GACATTATTC
GGTCATGTGA AAGGCGCGTT TACCGGTGCG TTACAAGCAA GAACGGGACT CTTACGTGAA
GCGGACGGCG GGATGCTTTT TTTGGATGAA ATCGCTGAAC TCGGGCTGGA TGAGCAGGCG
ATGTTGCTCA AGGCCATTGA AGAAAAGCAC TTTTTACCGT TTGGCTCGGA TAAAGAAGTC
AGCAGCGATT TCCAATTGAT TGCCGGCACA CACCGCAACC TGCACGAGTG GATCGCACAG
GGCAAATTCC GTGAAGATCT CTACGCCCGT ATCAATATGT GGACCTTTCC CCTGCCGGGC
TTGGCGGAAC GGCGGGAAGA CATCGAACCG AATATTGACT ACGAACTCCA GCGCTTCACA
CGCGATCACC AAACGCAGAT TCGCTTCGAT AAAGACGCAC GGCAACGCTA CCTCACCTTT
GCCTGCTCAC CGCAGGCCGC GTGGCGTGGC AACTTTCGCG AACTCGGCTC CTCCATCGCC
CGCATGGCAA CGCTGGCGGA ACAAGGGCGT ATCACCGTTG CACTGGTCGA GGAAGAAGTT
GCTCGCCTGC AAGCCAGTTG GCGACGTGAT GCGCCAGCAA CCGCGCTACC GCCAGAACTC
GCCAACATCG ATCTGTTTGA ACAGCGTCAG CTTGAAACCG TGCTTGATGT TTGCCGCACC
GCCAATTCGC TCTCCGAAGC CGGCCGCCAG CTGTTCGCCG TTTCACGCCA GCAAAAACAG
AAGCCCAACG ACGCTGACCG ACTGCGTAAG TATCTGGCAC GTTTTGGGCT GAGCTGGGAG
GAGTTGAAGC GGGGGGAAGG ATAA
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| Protein sequence | MKRRVIIGVL GTTLDKRGKR ENRWTKWRPT VGLCQQPDFP VDRLELLHQS RNEGMAQQVA
EDIAVVSPAT QVTLQTVELR DPWNLEEVYS AFLDFASRYP FDTENEEYFV HITTGTHVVQ
ICWFLLTEAR YLPAKLLQTA PGEKADRPAP QGIYAVIDLD LSRYATLTSR FQHEQERSVS
FLKSGIETRN STFNALIDQI ERVALRSTAP MLLTGPTGAG KSFLAQRIYQ LRQSRHLVSG
RFVAVNCATL RGDNAMSTLF GHVKGAFTGA LQARTGLLRE ADGGMLFLDE IAELGLDEQA
MLLKAIEEKH FLPFGSDKEV SSDFQLIAGT HRNLHEWIAQ GKFREDLYAR INMWTFPLPG
LAERREDIEP NIDYELQRFT RDHQTQIRFD KDARQRYLTF ACSPQAAWRG NFRELGSSIA
RMATLAEQGR ITVALVEEEV ARLQASWRRD APATALPPEL ANIDLFEQRQ LETVLDVCRT
ANSLSEAGRQ LFAVSRQQKQ KPNDADRLRK YLARFGLSWE ELKRGEG
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