| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0349 |
|---|
| Symbol | |
|---|
| ID | 8131263 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 404549 |
|---|
| End bp | 405919 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644863629 |
|---|
| Product | PTS system, sucrose-specific IIBC subunit |
|---|
| Protein accession | YP_003015944 |
|---|
| Protein GI | 253686754 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1263] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific |
|---|
| TIGRFAM ID | [TIGR00826] PTS system, glucose-like IIB component
[TIGR00852] PTS system, maltose and glucose-specific subfamily, IIC component
[TIGR01996] PTS system, sucrose-specific IIBC component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATATCA ACAAAACCGC CGCCGCGCTC ATCCCCCTTC TTGGCGGAAA AGAGAATATC
GCCAGCGCGG CTCACTGCGC GACTCGTCTG CGTCTGGTAC TGAATGACGA CAATTTGGCA
GACAAGAAAG CCATCGAGAA CGTTGACGGC GTGAAAGGCT GCTTCCAGAA CGCCGGACAA
ATGCAGATTA TTTTCGGTAC GGGACTGGTT AACAAGGTGT ATGCCGAGTT CATCAAAGCA
GCAGGCATCA GCGAATCGAG CAAGTCCGAA GCGGCCTCCA TCGCAGCGAA AAAGCTGAAC
CCACTGCAAC GTCTGGCGCG CCTGCTATCA AACATCTTCG TCCCTATCAT GCCGGCGATT
ATCGCTTCCG GTCTGTTGAT GGGGCTGCTC GGCATGATCA AGACCTACGG CTGGGTCGAT
GCCAGCAGCG CAATCTTCGT GATGCTGGAT ATGTTCAGCT CCGCTGCATT TATCATTTTG
CCTATCCTGA TCGGTTTTAC TGCCGCGCGG GAATTCGGCG GTAACCCCTA TCTGGGCGCG
ACGCTGGGCG GCATTCTGAC TCACCCAGCG CTGACCAACG CCTGGGGCGT CGCGGGCGGC
TTCCAAACCA TGCATTTTTT CGGCATGGAC ATCGCCATGA TCGGCTATCA GGGTACCGTG
TTTCCGGTCC TGCTGGCCGT CTGGTTCATG AGCATCGTGG AAAAGCGCCT GCGTAAAATC
GTCCCTGACG CATTGGATAT CATCGTCACG CCTTTCCTGA CGGTCATCAT TTCCGGCTTC
GTTGCGATGT TGATCATCGG TCCGGCTGGG CGCGCGCTGG GCGACGGCAT CTCTTTCTTA
CTCAGCACGT TGATTACTCA CGCGGGCTGG CTGGCCGGAT TGCTGTTCGG CGGCCTCTAT
TCCGCCATCG TCATCACCGG TGTTCATCAC AGCTTCCATG CTATTGAAGC CGGACTGCTG
GGCAACCCTA ATATCGGTGT CAACTTCCTG CTGCCAATTT GGGCGATGGC GAACGTGGCA
CAGGGCGGTG CGTGTCTGGC GGTATACTTC AAAACGCGTG ATGCCAAAAC CCGAGCGATT
GCCGTTCCCG CAGGGCTGTC TTGCCTGCTG GGCATCACTG AAGCCGCGAT ATTTGGTATC
AACCTGCGCT TCATTAAACC GTTCCTGGCT GCACTGGCTG GCGGTGCACT CGGTGGCGCG
TGGGTCGTCT TCAATCACGT CAATATGACG GCCGTCGGGC TGACCGGTTT TCCAGGTCTG
GCCATTGTGC AAGGAGGATC GATGCTTAAC TACCTGATTG GGATGTTCAT TGCGTTCGGT
GCCGCCTTTA CCCTGTCCTT ATTGCTGAAA TATAAAACGG ATAGCGAATA A
|
|---|
| Protein sequence | MDINKTAAAL IPLLGGKENI ASAAHCATRL RLVLNDDNLA DKKAIENVDG VKGCFQNAGQ
MQIIFGTGLV NKVYAEFIKA AGISESSKSE AASIAAKKLN PLQRLARLLS NIFVPIMPAI
IASGLLMGLL GMIKTYGWVD ASSAIFVMLD MFSSAAFIIL PILIGFTAAR EFGGNPYLGA
TLGGILTHPA LTNAWGVAGG FQTMHFFGMD IAMIGYQGTV FPVLLAVWFM SIVEKRLRKI
VPDALDIIVT PFLTVIISGF VAMLIIGPAG RALGDGISFL LSTLITHAGW LAGLLFGGLY
SAIVITGVHH SFHAIEAGLL GNPNIGVNFL LPIWAMANVA QGGACLAVYF KTRDAKTRAI
AVPAGLSCLL GITEAAIFGI NLRFIKPFLA ALAGGALGGA WVVFNHVNMT AVGLTGFPGL
AIVQGGSMLN YLIGMFIAFG AAFTLSLLLK YKTDSE
|
|---|
| |