| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0347 |
|---|
| Symbol | |
|---|
| ID | 8131261 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 402090 |
|---|
| End bp | 403109 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644863627 |
|---|
| Product | transcriptional regulator, LacI family |
|---|
| Protein accession | YP_003015942 |
|---|
| Protein GI | 253686752 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR02417] D-fructose-responsive transcription factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.427458 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAACCGA CTAAACGCAT AACAATCAGT GACATCGCCG CGCTGGCCGG TGTATCAAAA
TCCACCGCCA GTCTGGTACT GAACGGACGT AGCAAAGAGT TTCGCGTTTC TGATGAAACC
CGCGATCGCA TTTTGGCCGT CGCGCATGAG CAGCGTTATC AGCCCAGCAT TCACGCCCGT
TCGCTGCGTT CCTCACGCAG CAACACACTG GGTCTGGTGG TGCCAGAAAT GACTAACTAC
GGCTTTGCCG TGATTTCCCG CGAGCTGGAG ATGCTGTGCC GTGAAGCAGG GCTACAGTTG
CTGATTGCCT GCACCGACGA AAATGCCAGT CAGGAGATGA TGGCGGTGAA CAGTCTGGTT
CAGCGTCAGG TCGATGGTCT GATTGTCGCC TCCAGCCTAT TGAGCGATAT CGAATATCAG
AAAATTAATC AGCAGTTACC TGTCATACAA TTTGATCGGG TGATTGGTGA CTCCACGCTG
CCGATGGTGA TTTCCGAAGC GGTAGAATCC ACGGCGGAAA TGGTCGAACG TATCGCTCGC
CAACATCGTG ATGAGTTCTA TTTCCTTGGC GGCCAGCCGA GAATCTCTCC GACTCGCCAC
CGTCTGGAAG GCTTCCAGCT CGGGCTGGCA CGCACAGGCA TCGACTGCAA GCCGGAATGG
ATTATTCATG GCAGCTATCA CCCCAGCGCG GGTTATGAAA TGTTTGCCCA ACTGTGTGCA
ACGCTGGGTC GTCCGCCAAA AGCGCTGTTT GTCGCCGCCT GTGGCCTAAT GGAAGGCGTG
CTGCGTTATA TGAACCAGCA TAACCTGATG GAAAGCGGCA TCCGACTATG CTGCTTTGAC
GATCACTATC TGTTTGATTG TTTACCGTTG AAAATCGACA CCGTGGCGCA GGATTGTGAA
AATCTGGCAC GCAACAGCTT TGAAATGGTA ACCAGCCTGA TTGCACAGCA GCCGCTTGAA
GAAGATCGGC GCTACATCCC GACACGGATT CACTGGCGTC ACCCTGACTC GCGGGCGTAG
|
|---|
| Protein sequence | MKPTKRITIS DIAALAGVSK STASLVLNGR SKEFRVSDET RDRILAVAHE QRYQPSIHAR
SLRSSRSNTL GLVVPEMTNY GFAVISRELE MLCREAGLQL LIACTDENAS QEMMAVNSLV
QRQVDGLIVA SSLLSDIEYQ KINQQLPVIQ FDRVIGDSTL PMVISEAVES TAEMVERIAR
QHRDEFYFLG GQPRISPTRH RLEGFQLGLA RTGIDCKPEW IIHGSYHPSA GYEMFAQLCA
TLGRPPKALF VAACGLMEGV LRYMNQHNLM ESGIRLCCFD DHYLFDCLPL KIDTVAQDCE
NLARNSFEMV TSLIAQQPLE EDRRYIPTRI HWRHPDSRA
|
|---|
| |