Gene PC1_0343 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0343 
Symbol 
ID8131257 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp398242 
End bp398748 
Gene Length507 bp 
Protein Length168 aa 
Translation table11 
GC content44% 
IMG OID644863623 
ProductTripartite ATP-independent periplasmic transporter DctQ component 
Protein accessionYP_003015938 
Protein GI253686748 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCACAGT CTTATCTTTC CAGCATGGAT GTACTCTATC GTATTGCCAT GTGGGTTTCT 
GGTCTGGCGT TATTAATTAT GACGATCGTA ATTCCTGTCG GTATATTCGC ACGCTATGTA 
TTAAATGCCG CATTATCCTG GCCAGAACCC ATTTCAATTA TCTGTATGGT GACGTTTACT 
TTTGTAGGCG CAGCCGTCAG TTACCGTTCC AACTCACATA TTGCCGTCAG TATGTTAACC 
GACAGATTGC CAGAATCCGG TAAGAAGATT TGCGTGCATC TGTCGAACCT CCTGATGCTC 
TTAATCAGCC TGTTTATTCT CTATTACAGC ACGTTACTTT GTCTGGAATT ATGGGAACAG 
CCCGTTGCGG AGTTTCCGTT ATTGACTGCA GGTGAAAGTT ATTTACCGCT GCCTATCGGT 
TCGTTAATCA CCGTGCTCTT CATCATCGAA AAAATGTTTT TCGGCCCGCA GGATAAACGC 
CCTGTGGTAA TGCTTGGCAG TTCTTAA
 
Protein sequence
MAQSYLSSMD VLYRIAMWVS GLALLIMTIV IPVGIFARYV LNAALSWPEP ISIICMVTFT 
FVGAAVSYRS NSHIAVSMLT DRLPESGKKI CVHLSNLLML LISLFILYYS TLLCLELWEQ 
PVAEFPLLTA GESYLPLPIG SLITVLFIIE KMFFGPQDKR PVVMLGSS