| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0332 |
|---|
| Symbol | |
|---|
| ID | 8131246 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 384435 |
|---|
| End bp | 386705 |
|---|
| Gene Length | 2271 bp |
|---|
| Protein Length | 756 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644863612 |
|---|
| Product | DNA topoisomerase IV subunit A |
|---|
| Protein accession | YP_003015927 |
|---|
| Protein GI | 253686737 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
|---|
| TIGRFAM ID | [TIGR01062] DNA topoisomerase IV, A subunit, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAGA TGACTCATGA CGGCGCAGAA AGCCTTGCGC TGCGCACGTT TACCGAAAAT
GCATACCTGA ATTATTCCAT GTACGTCATC ATGGACAGGG CATTGCCGTT CATTGGCGAT
GGCCTGAAGC CTGTGCAGCG TCGCATTGTG TATGCGATGT CCGAACTGGG GCTGAATGCC
AGCGCCAAAT TCAAAAAATC CGCCCGTACC GTGGGTGACG TGCTGGGTAA ATACCATCCG
CACGGCGACA GCGCCTGCTA TGAAGCCATG GTGCTGATGG CGCAGCCGTT CTCGTACCGC
TACCCGCTGG TGGATGGTCA GGGGAACTGG GGGGCGCCGG ACGATCCGAA ATCCTTCGCC
GCCATGCGTT ATACCGAATC GCGGCTGTCC AAATATGCTG AAATTCTGCT GTCGGAGTTA
GGGCAGGGTA CGGTCGACTA CACCCCGAAT TTTGACGGGA CGATGCAGGA GCCGAAGATG
CTACCTGCGC GTCTGCCGAA TATTCTGCTG AACGGCACCA CTGGGATCGC CGTCGGCATG
GCAACGGATA TTCCGCCGCA TAACGTGCGT GAAGTCGCCG CCGCTGCGGT CATGTTGCTG
GAAAATCCGA AGGCTTCGCT GGACGATTTA TTGCAGCACG TGCAGGGGCC AGATTTCCCG
ACGGAAGCTG AAATCATCAC GCCGCGCGAT GAAGTGCGCA AACTCTACCA GAATGGCCGT
GGCTCGGTAC GTATGCGCGC AGTCTGGAAG AAAGAAGACG GTGATGTCGT CATTACCGCG
CTGCCACATC AGGTTTCCGG TGCCAAAGTG CTGGAGCAGA TTGCCAGCCA GATGCGTGCG
AAGAAACTGC CGATGGTGGA AGACCTGCGC GACGAATCCG ATCACGAGAA TCCAACCCGT
CTGGTGCTGG TGCCGCGCTC GAACCGTATC GATATGGATC AGGTGATGAA TCACCTGTTC
GCCACGACCG ATCTGGAAAA GAGCTATCGC GTTAACATGA ATATGATCGG TCTGGATGGT
CGCCCTAGCG TGAAAGGGCT GGTCGAGATC CTGAGTGAGT GGCTGGTATT CCGTCGTGAC
ACGGTGTGCC GCCGTCTGAA CTACCGTCTG GAAAAAGTGC TCAAGCGCCT GCATATCCTT
GAAGGCTTGC TGATTGCGTT CCTGAATATT GATGAAGTCA TCCATATCAT CCGCACGGAA
GATGAGCCGA AGCCGGTACT GATGCGCCAG TTCAGCCTGA GTGAAACACA GGCTGAAGCG
ATCCTGGAAC TGAAATTACG TCATTTGGCC AAGCTGGAAG AGATGAAAAT CCGCGGTGAG
CAGGACGATC TGGCAAAAGA GCGCGATCAG CTTCAAGCGC TGCTGGCGTC AGATCGTAAG
CTCAGCAATC TGATTAAGAA AGAAATTCAG GCGGATGCGC AAACCTATGG CGACGATCGT
CGTTCGCCGC TGTATGAACG CAGCGAAGCG AAAGCGATGA GTGAACATGA CTTTGTGCCG
TCAGAACCGG TCACCATTGT GCTGTCGGAA ATGGGCTGGG TGCGCAGCGC CAAAGGGCAT
GACATCGATC CTGCCGGGTT GAGTTACAAA GCGGGCGATA GCTTCCGCGC CGCTGCGAAA
GGTAAGAGCA ATCAGCCTGT GGTGTTTATT GACTCCACCG GCCGTAGCTA CGCGTTGGAC
CCGATCACGC TGCCTTCCGC ACGTGGTCAG GGCGAGCCGC TGACGGGCAA ACTTACGCCG
CCGCCGGGCG CGACGATTGA ACAGGTGCTG ATGGCCGCAG ACGATCAGCC GCTGCTGATG
GCATCGGATG CAGGCTACGG TTTCGTGTGT ACCTTCAACG ATCTGGTCGC GCGCAACCGC
GCAGGTAAAG CGATTATTAC ACTGCCGGAT AATGCGAAGG CGTTAGCTCC GATGGAGATC
CACGGTGACG ATAACCTGCT GATGGCGATC ACCGCCGCAG GCAGAATGCT GTTGTTCCCT
GTATCCGATC TGCCACAGCT GTCGAAAGGC AAAGGCAACA AGATTGTGTC CATCTCCTCG
GCTGATTTTG CTGAAGGTAA AGACCGTCTG ACCTGGCTGT ATCTGCTACC ACCACAGGCT
TCCGTCACGC TGTATTTCGG TAAGCGTAAG CTGGTGCTGC GTCCGAACGA GCTTCAGAAG
TATCAGGGTG AGCGTGGGCG GAAAGGCACG TTGCTGCGTG GGCTACAGCG CATTGACCGG
ATTGAGGTGG ATGCACCGCA GCAGATTAGC ACTGGCAGCA GCGAAGAATA A
|
|---|
| Protein sequence | MSEMTHDGAE SLALRTFTEN AYLNYSMYVI MDRALPFIGD GLKPVQRRIV YAMSELGLNA
SAKFKKSART VGDVLGKYHP HGDSACYEAM VLMAQPFSYR YPLVDGQGNW GAPDDPKSFA
AMRYTESRLS KYAEILLSEL GQGTVDYTPN FDGTMQEPKM LPARLPNILL NGTTGIAVGM
ATDIPPHNVR EVAAAAVMLL ENPKASLDDL LQHVQGPDFP TEAEIITPRD EVRKLYQNGR
GSVRMRAVWK KEDGDVVITA LPHQVSGAKV LEQIASQMRA KKLPMVEDLR DESDHENPTR
LVLVPRSNRI DMDQVMNHLF ATTDLEKSYR VNMNMIGLDG RPSVKGLVEI LSEWLVFRRD
TVCRRLNYRL EKVLKRLHIL EGLLIAFLNI DEVIHIIRTE DEPKPVLMRQ FSLSETQAEA
ILELKLRHLA KLEEMKIRGE QDDLAKERDQ LQALLASDRK LSNLIKKEIQ ADAQTYGDDR
RSPLYERSEA KAMSEHDFVP SEPVTIVLSE MGWVRSAKGH DIDPAGLSYK AGDSFRAAAK
GKSNQPVVFI DSTGRSYALD PITLPSARGQ GEPLTGKLTP PPGATIEQVL MAADDQPLLM
ASDAGYGFVC TFNDLVARNR AGKAIITLPD NAKALAPMEI HGDDNLLMAI TAAGRMLLFP
VSDLPQLSKG KGNKIVSISS ADFAEGKDRL TWLYLLPPQA SVTLYFGKRK LVLRPNELQK
YQGERGRKGT LLRGLQRIDR IEVDAPQQIS TGSSEE
|
|---|
| |