| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0298 |
|---|
| Symbol | gltD |
|---|
| ID | 8131211 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 342834 |
|---|
| End bp | 344252 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644863578 |
|---|
| Product | glutamate synthase subunit beta |
|---|
| Protein accession | YP_003015893 |
|---|
| Protein GI | 253686703 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01318] glutamate synthase small subunit family protein, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAGA ATGTTTACCA GTTTATCGAC TTACAGCGCG TTGATCCGCC CAAGAAACCG
CTGAAAATTC GTAAAATTGA ATTTGTTGAG ATCTACGAGC CGTTCTCAGA AAGCCAGTCC
AAAGCTCAGG CAGACCGCTG CCTGGCGTGC GGTAACCCTT ACTGTGAGTG GAAGTGTCCG
GTACATAACT ACATCCCGAA CTGGCTGAAG CTGGCGAACG AAGGCCGCAT TATCGAAGCG
GCTGAGTTAT CACACCAGAC CAACAGCCTG CCGGAAGTCT GCGGTCGCGT GTGCCCGCAG
GATCGTCTGT GTGAAGGGTC ATGTACGCTG AATGATGAGT TCGGCGCAGT CACCATCGGC
AACATCGAAC GCTATATCAA TGATAAAGCG ATCGAGATGG GCTGGAAGCC AAGCGTAGCC
AACGTCAAAC CGACCGGCAA ACGCGTGGCT ATCATTGGTG CTGGCCCGGC AGGGCTGGCC
TGTGCCGATG TACTGGCGCG CAATGGCGTA CAGGCCGTCG TCTTCGATCG TCATCCTGAG
ATCGGTGGCC TGCTGACCTT CGGTATCCCC TCTTTCAAAC TGGAAAAAGA GGTGATGGTG
AAACGTCGTG AGATTTTCAC CGAGATGGGC ATCGAATTCC GCCTGAACAC TGAAGTCGGC
AAAGACGTGC AGATGAAAGC GCTGCTGGAC GAATACGATG CCGTATTCCT CGGCGTCGGC
ACCTATCAGT CTATGCGCGG TGGATTGGAC AATGAAGACG CTCAGGGTGT CTACGATGCT
CTGCCGTTCC TGATTGCCAA CACCAAGCAA CTGATGGGCT TTGAGGCCGC AGCAGACGAG
CCTTACGTCA GCATGCAAGG TAAACGCGTT GTGGTGCTGG GCGGTGGTGA CACCGCGATG
GACTGCGTGC GTACCTCGAT TCGTCAGGGT TCAACGCACG TTACCTGTGC TTATCGTCGC
GATGAAGAGA ACATGCCGGG TTCCAAACGC GAAGTGAAAA ACGCGCGTGA AGAAGGCGTC
GAGTTCAAGT TCAACCTGCA ACCGTTAAGC GTCGAGATCA ACGGCGCTGG CAAGGTGTGC
GGCGTGAAAA TGGCGCGTAC CGCACTGGGT GCGCCAGATG CCAACGGGCG TCGTCGTCCT
GAAATCGTAG AAGGTTCCGA GCATGTTCTG GAAGCCGATG CGGTCATCAT GGCGTTCGGC
TTTCGTCCGC ACAAAATGGC GTGGCTGGCA GAACATGACG TCAAGCTGGA CGATCAAGGT
CGCATTGTCG CACCGGAAAG CTGCGATAAC GCCTTCCAGA CCAGCAACCC GAAAATTTTT
GCGGGTGGCG ATGCAGTACG CGGTTCCGAT CTGGTGGTTA CCGCCATTGC AGAAGGCCGT
AAAGCCGCTG ACGGCATCAT GAACTATCTG GAAGTGTAA
|
|---|
| Protein sequence | MSQNVYQFID LQRVDPPKKP LKIRKIEFVE IYEPFSESQS KAQADRCLAC GNPYCEWKCP
VHNYIPNWLK LANEGRIIEA AELSHQTNSL PEVCGRVCPQ DRLCEGSCTL NDEFGAVTIG
NIERYINDKA IEMGWKPSVA NVKPTGKRVA IIGAGPAGLA CADVLARNGV QAVVFDRHPE
IGGLLTFGIP SFKLEKEVMV KRREIFTEMG IEFRLNTEVG KDVQMKALLD EYDAVFLGVG
TYQSMRGGLD NEDAQGVYDA LPFLIANTKQ LMGFEAAADE PYVSMQGKRV VVLGGGDTAM
DCVRTSIRQG STHVTCAYRR DEENMPGSKR EVKNAREEGV EFKFNLQPLS VEINGAGKVC
GVKMARTALG APDANGRRRP EIVEGSEHVL EADAVIMAFG FRPHKMAWLA EHDVKLDDQG
RIVAPESCDN AFQTSNPKIF AGGDAVRGSD LVVTAIAEGR KAADGIMNYL EV
|
|---|
| |