| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0258 |
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| Symbol | tldD |
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| ID | 8131171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 305007 |
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| End bp | 306452 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644863538 |
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| Product | protease TldD |
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| Protein accession | YP_003015853 |
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| Protein GI | 253686663 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0312] Predicted Zn-dependent proteases and their inactivated homologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCCTTT CGTTTGTCAG TGAGCAGTTA CTCACCGCCA ATAAATTGAA TCTTGACGAT
CTCGCCGCTG TGCTGGGGTC GCTTAATGAG CGTCGTCTAG ACTATGCCGA TCTCTATTTC
CAGTCCAGCT ACCATGAATC CTGGGTACTG GAAGATCGCA TCATTAAAGA CGGTTCTTAC
AATATCGATC AGGGCGTGGG TATCCGTGCG ATTGACGGTG AAAAGACCGG GTTTGCTTAT
GCCGATCAGA TCACGCTGAA CGCATTGCAT CAGAGTGCGC AGGCAGCACG CAGCATTGTG
CGGGAACAGG GGACAGGCAC GGCGCGCACG CTGGGTGAAG TGTCGCATCG GGCGCTCTAT
CCAACGTTGA ATCCACTGGA TAGCCTGACG CGTGAGGACA AAATTGCGCT GTTGCAACGT
GCAGATACGG TCGCGCGTGC CGCAGATGCA CGCGTGCAGG AAGTGTCAGC CAGCCTGACT
GGCGTCTATG AGCTGGTGCT GGTGGCGGCA ACAGACGGTA CGCTGGCGGC GGATGTGCGT
CCACTGGTTC GCCTGTCGAT CAGCGTGCTG GTCGAAGCTG AAGGCAAACG TGAGCGCGGT
TCCAGTGGTG GCGGCATGCG TGGCGGCTAT GACTATTTCT GGGAAGTGGC GGACGGTGAA
GCGCGTGTTG ATGCGTGGGC GAAAGAAGCC GTGCGTATGG CGCTAGTTAA CCTGTCGGCG
GTGGCTGCAC CTGCAGGGCC AATGCCGGTG GTGTTGGGCG CGGGCTGGCC GGGCGTGTTG
CTGCATGAAG CGGTGGGTCA CGGTCTGGAA GGCGACTTTA ACCGTCGCGG CACGTCAGTA
TTCAGCGGAC AGATGGGGAA ACTCGTTGCG TCAGAGCTGT GTACAGTGGT GGATGATGGC
ACATTGAGCG GACGCCGTGG CTCCCTCTCA ATGGACGATG AGGGCGTTCC GGGGCAGTAC
AACGTCCTGA TCGAAAACGG TATTCTGAAA GGCTACATGC AAGACAAGCT GAATGCTCGT
CTGATGGGCG TTGCGCCGAC GGGCAACGGT CGCCGCGAGT CTTATGCACA TCTGCCGATG
CCGCGTATGA CGAACACCTA CATGCTGGCC GGGAAATCCA CGCCGGAAGA GATTATCTCT
AGCGTCGAAT ACGGCCTGTA TGCGCCAAAC TTTGGCGGCG GTCAGGTCGA TATCACTTCT
GGCAAGTTCG TCTTCTCGAC GTCCGAAGCG TACCTGATCG AAAAAGGTCG TATCACCACG
CCAGTCAAAG GTGCCACGCT GATTGGCTCC GGTATCGAAG CGATGCAGCA GATTTCAATG
GTCGGCAACG ATCTGGCGCT GGATAAAGGC GTCGGCGTGT GCGGTAAAGA AGGGCAAAGC
CTGCCTGTCG GCGTTGGCCA ACCTACGTTG AAGTTGGAAA GCCTGACCGT CGGCGGCACG
GCGTAA
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| Protein sequence | MSLSFVSEQL LTANKLNLDD LAAVLGSLNE RRLDYADLYF QSSYHESWVL EDRIIKDGSY
NIDQGVGIRA IDGEKTGFAY ADQITLNALH QSAQAARSIV REQGTGTART LGEVSHRALY
PTLNPLDSLT REDKIALLQR ADTVARAADA RVQEVSASLT GVYELVLVAA TDGTLAADVR
PLVRLSISVL VEAEGKRERG SSGGGMRGGY DYFWEVADGE ARVDAWAKEA VRMALVNLSA
VAAPAGPMPV VLGAGWPGVL LHEAVGHGLE GDFNRRGTSV FSGQMGKLVA SELCTVVDDG
TLSGRRGSLS MDDEGVPGQY NVLIENGILK GYMQDKLNAR LMGVAPTGNG RRESYAHLPM
PRMTNTYMLA GKSTPEEIIS SVEYGLYAPN FGGGQVDITS GKFVFSTSEA YLIEKGRITT
PVKGATLIGS GIEAMQQISM VGNDLALDKG VGVCGKEGQS LPVGVGQPTL KLESLTVGGT
A
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