Gene PC1_0254 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0254 
Symbol 
ID8131167 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp298529 
End bp299017 
Gene Length489 bp 
Protein Length162 aa 
Translation table11 
GC content47% 
IMG OID644863534 
Productrod shape-determining protein MreD 
Protein accessionYP_003015849 
Protein GI253686659 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2891] Cell shape-determining protein 
TIGRFAM ID[TIGR03426] rod shape-determining protein MreD 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.0028978 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCGTT ATCGCAGGCA TGGCAACTGG ATTATCTGGC TTTCTTTTCT GATCGCCATG 
GTGTTGCAGA TTATGCCGTG GCCGGATGAA ATCTACATGT TTCGCCCCTC CTGGCTGACG 
CTATTCTTGA TTTACTGGGT GATGGCATTG CCACATCGGG TGAATGTCGG CACAGGATTT 
ATATTAGGTC TGATTATGGA CCTGATTCTT GGGTCTACAC TGGGAGTACG GGCGCTGGCG 
TTGAGCATTA TTGCTTATCT GGTCGCCTTT AAATTCCAAC TGTTCCGAAA TATGGCGTTA 
TGGCAGCAGG CATTAATCGT CATGCTCTTG TCGCTGCTGA TGGACCTCAC GGTATTCTGG 
GCAGAATTTT TAGTTATTAA TGTCTCTTTC CGACCAGAAA CATTCTGGAA TAGCGTCGTG 
GATGGCGTAC TCTGGCCGTG GCTGTTCCTG CTGATGCGTA AAATTCGTCG TCAGTTTACT 
GTGCAATAA
 
Protein sequence
MNRYRRHGNW IIWLSFLIAM VLQIMPWPDE IYMFRPSWLT LFLIYWVMAL PHRVNVGTGF 
ILGLIMDLIL GSTLGVRALA LSIIAYLVAF KFQLFRNMAL WQQALIVMLL SLLMDLTVFW 
AEFLVINVSF RPETFWNSVV DGVLWPWLFL LMRKIRRQFT VQ