| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0247 |
|---|
| Symbol | |
|---|
| ID | 8131160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 291490 |
|---|
| End bp | 292491 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644863528 |
|---|
| Product | putative sulfite oxidase subunit YedY |
|---|
| Protein accession | YP_003015843 |
|---|
| Protein GI | 253686653 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2041] Sulfite oxidase and related enzymes |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.15698 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACAAAC ATCGCAAACC CACTGAAGCC GACGTTACCC CGGAATCCCT CTTCTATCAG
CGTCGGCGCA TATTAAAAGC GCTGGGTATT TCCGCTGCCG CGCTTTCACT GCCGTTTTCT
GCACAGGCCG ACCTGCTGGC CTGGTTTAAA GGCACCGATA AACCCAAAGC GCCGCCGGGT
AAACCGCTCA CATTTAGCCA ACCCGCTGAC TGGAAGCTCG ACTTGCCGCT CACACCGGAA
GATAAGGTTA CGGGCTATAA CAACTTCTAT GAGTTCGGGC TGGATAAAGC AGATCCCGCA
GCCAATGCTG GCGGGTTAAA AACCGAAGGC TGGACCATTA AGATAGACGG TGATGTCGCC
AAACCGCTCA CGTTGGATAT CGACGATTTG CTAAAGCGCT TTCCGCTGGA AGAGCGGATC
TACCGTTTTC GCTGCGTCGA AGCGTGGTCG ATGGTCATTC CGTGGGTCGG TTTTGAGCTG
GCCAAGCTGA TTAAATTTGC TGAACCCACC AGCAACGCAC GCTACGTGGC GTTTCAGACG
CTGTACGACC CAGAGCAGAT GCCGGGACAA AAAGATCGCT TCATGGGCGG CGGGCTGGAT
TATCCCTATG TAGAAGGGTT GCGGATGGAT GAAGCCATGA ACCCGTTGGC ACTGCTTGCC
GTTGGCGTTT ACGGCAAGAC GTTGCCGCCG CAGAATGGTG CCCCCATCCG GTTAGTCACG
CCGTGGAAAT ACGGCTTCAA AAACATCAAA TCCATCGTAC ATATCCGATT CACGCGTGAG
AAACCACCCT GCACCTGGAA CCTGGCAGCC CCGGATGAAT ATGGCTTCTA TGCCAACGTT
AACCCCCATG TGGATCACCC GCGCTGGTCG CAGGCGACAG AACGCGTCAT CGGTTCAGGC
GGCCTGCTTA ACGTTGAGCG TCAACCCACG CTGTTGTTCA ACGGCTATGC GGAACAGGTC
GCTTCGCTGT ATCGCGGCTT GAATCTGCGC GACAACTTTT AG
|
|---|
| Protein sequence | MHKHRKPTEA DVTPESLFYQ RRRILKALGI SAAALSLPFS AQADLLAWFK GTDKPKAPPG
KPLTFSQPAD WKLDLPLTPE DKVTGYNNFY EFGLDKADPA ANAGGLKTEG WTIKIDGDVA
KPLTLDIDDL LKRFPLEERI YRFRCVEAWS MVIPWVGFEL AKLIKFAEPT SNARYVAFQT
LYDPEQMPGQ KDRFMGGGLD YPYVEGLRMD EAMNPLALLA VGVYGKTLPP QNGAPIRLVT
PWKYGFKNIK SIVHIRFTRE KPPCTWNLAA PDEYGFYANV NPHVDHPRWS QATERVIGSG
GLLNVERQPT LLFNGYAEQV ASLYRGLNLR DNF
|
|---|
| |