| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0240 |
|---|
| Symbol | panF |
|---|
| ID | 8131153 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 285328 |
|---|
| End bp | 286779 |
|---|
| Gene Length | 1452 bp |
|---|
| Protein Length | 483 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644863521 |
|---|
| Product | sodium/panthothenate symporter |
|---|
| Protein accession | YP_003015836 |
|---|
| Protein GI | 253686646 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4145] Na+/panthothenate symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR02119] sodium/pantothenate symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATTG AAATTTTATT GCCGCTGATT GGCTATCTGC TGCTGGTCTT CGGGCTGTCG
GTCTATGCGT ACCGTCGCCG TCAGGCGGGC AACTTTCTTA ACGAATACTT CCTTGGCGGC
CGCTCAATGG GCGGGTTTGT GCTAGCAATG ACGCTGATCG GCACTTACGT CAGCGCCAGC
TCATTTATCG GCGGACCGGG TGCCGCCTAC AAATACGGGC TGGGCTGGGT GCTGCTTTCA
ATGATCCAGC TTCCTACCAT GCTGCTGTCG TTGGGCATTC TGGGGAAAAA ATTCGCCATT
TTGGCGCGGC GCTACAACGC CATCACGCTG AATGACATGC TGTACGCCCG CTATAACAGC
CCGCTGTTGG TGTGGTTCGC CAGCATCAGC CTGCTGGTCG CGTTTATCGG CGCGATGGCC
GTCCAGTTCA TCGGCGGCGC ACGCCTGCTG GAAACCGCAG CGAACATCCC TTACGACATC
GGCCTGCTGA TTTTTGGCGT CACCATCGCG CTCTACACCA CATTTGGCGG TTTCCGTGCC
AGCGTGCTGA ACGATGCGAT GCAAGGCATC GTGATGTTGA TCGGCACCGT CATCCTGCTA
GTCGGCGTGA TCTATGCCGC TGGCGGTTTG CACAGCGCGG TGGATAAACT GCAACAGATC
GACCCAATGC TGGTCTCGCC GCAGGGCAGC GGCGGTATTC TGTCGATGCC GTTTATGGCT
TCATTCTGGG TGCTGGTCTG CTTCGGTGTT ATTGGCCTGC CGAACACCGC CGTTCGCTGC
ATCTCTTATC GCGACAGCAA AGCGCTACAC CGCGGGATTA TTATCGGTAC CATCGTCATT
GGCATCCTGA TGCTCGGCAT GCATCTGGCT GGGGCGCTGG GCCGCGCCGT GATGCCAAAT
CTGACAATTC CCGACCAGGT GTTACCGGCG CTGATGGTCA CGGTGCTACC GCCGCTGGCC
GCCGGGATCT TTCTCGCTGC GCCAATGGCC GCTATCATGT CCAACATTAA TGCGCATCTG
CTTCAGGCTT CCGCGACGAT CATCAAGGAT CTCTATCTCA GCGTACGTCC GCAGCAGATC
CATAACGAAC GTCGCATCAA GATCCTGTCC AGCATGACCA CACTGCTGTT GGGTCTGCTG
GTGCTACTGG CTTCATTACG GCCACCGGAT ATGATCATCT GGCTGAACCT GCTGGCGTTT
GGAGGACTGG AAGCGGTGTT CCTATGGCCG CTGGTGCTGG GCCTGTACTG GGAACGCGCG
AATGCCGCGG GTGCGCTTAG CGCCATGTTC AGCGGGGCGA TTTGCTATAC CTTACTGGCC
AGCTTCAATC TTCAACTGGC CGGATATCAC CCGATTGTGC CATCGCTGTT ACTCAGCCTG
ATGGCGTTTA TTATTGGCAA CCGCTTTGGT CATAATCCAC CAGCGCCAGT TGCCGCTTCA
TCTTCACTTT AA
|
|---|
| Protein sequence | MQIEILLPLI GYLLLVFGLS VYAYRRRQAG NFLNEYFLGG RSMGGFVLAM TLIGTYVSAS
SFIGGPGAAY KYGLGWVLLS MIQLPTMLLS LGILGKKFAI LARRYNAITL NDMLYARYNS
PLLVWFASIS LLVAFIGAMA VQFIGGARLL ETAANIPYDI GLLIFGVTIA LYTTFGGFRA
SVLNDAMQGI VMLIGTVILL VGVIYAAGGL HSAVDKLQQI DPMLVSPQGS GGILSMPFMA
SFWVLVCFGV IGLPNTAVRC ISYRDSKALH RGIIIGTIVI GILMLGMHLA GALGRAVMPN
LTIPDQVLPA LMVTVLPPLA AGIFLAAPMA AIMSNINAHL LQASATIIKD LYLSVRPQQI
HNERRIKILS SMTTLLLGLL VLLASLRPPD MIIWLNLLAF GGLEAVFLWP LVLGLYWERA
NAAGALSAMF SGAICYTLLA SFNLQLAGYH PIVPSLLLSL MAFIIGNRFG HNPPAPVAAS
SSL
|
|---|
| |