| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0228 |
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| Symbol | |
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| ID | 8131141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 273687 |
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| End bp | 274865 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644863509 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_003015824 |
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| Protein GI | 253686634 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4597] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTACAAC GCCCAACCGT AAAAGGTGAT TTATCACTGA CTAATCCAGC GGTGCGCGCC
TGGCTGTATC AAATTGTCGT TGTTATCGCT GTATTGGCTG TCGCAGCCTA CCTGTTGCAC
AACACCGTGA CCAATCTGGC ACAGAGGGGC ATCACCTCTG GCTTCGATTT CCTGAATAAA
AGCGCTGGCT TTGGCATCGT CCAACACCTG ATTGACTATC AACAAGGCGA CACCTACGCC
CGTGTTTTCC TTGTTGGGCT ATTCAACACA CTGCTGGTGT CGGCATTGTG TATCGTATTC
GCGTCGATTC TCGGCTTTAC CATCGGTCTC GCACGGCTGT CGGATAACTG GCTACTACGA
AAAATATCTA ATATTTACAT CGAGATATTT CGTAATATCC CGCCGCTATT GCAGATCTTC
TTCTGGTATT TTGCCGTACT GCGAAATCTG CCGGGACCAC GTCAGTCAAT CAGCGCCTTT
GATGTCGCCT TTCTCAGCAA TCGTGGCTTC TATCTGCCCT CTCCTGAATT GGGGCCGGGT
GCAGCGGCAT TTTTTCTTTC TCTCATTATT ACGTTGGTCG TGACATGGGG CGTTTTTCGG
CGTAACCAGC GCTATCATGC GTTAACCGGT CAGCCACGCA GAACCTGGCC GCTGGCACTA
GGCCTGTTGC TTGGGCTGTG TGCACTCAGC CATCTGATTT TTGGCGCGGC CTTTCACTGG
GACATGCCGG AATTAAAAGG GTTTAATTTC CGCGGCGGTA TGGTGCTTAT CCCTGAACTG
GCGGCATTAA CCGTCGCCCT GTCGGTCTAC ACCTCATCGT TTATCGCCGA GATCATTCGT
TCAGGCATCC AATCGGTTTC TCACGGTCAA CACGAGGCGG CACGCTCTCT TGGATTACCG
AATCCCGTTA CGCTGCGCAA AGTGATCCTC CCACAGGCAC TACGCGTCAT CATTCCGCCA
CTGACCAGCC AGTATCTGAA TATTGTGAAA AACTCTTCGC TGGCTGCCGC GATTGGTTAT
CCCGATATGG TGTCGCTGTT CGCTGGAACG GTGCTCAATC AGACCGGCCA GGCCATTGAG
ACCATCGCCA TTACCATGTC GGTCTACCTC ATTATCAGTC TGCTGATCTC GCTGCTGATG
AACCTGTATA ACCGCAAGAT CGCATTAGTC GAACGCTAA
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| Protein sequence | MLQRPTVKGD LSLTNPAVRA WLYQIVVVIA VLAVAAYLLH NTVTNLAQRG ITSGFDFLNK
SAGFGIVQHL IDYQQGDTYA RVFLVGLFNT LLVSALCIVF ASILGFTIGL ARLSDNWLLR
KISNIYIEIF RNIPPLLQIF FWYFAVLRNL PGPRQSISAF DVAFLSNRGF YLPSPELGPG
AAAFFLSLII TLVVTWGVFR RNQRYHALTG QPRRTWPLAL GLLLGLCALS HLIFGAAFHW
DMPELKGFNF RGGMVLIPEL AALTVALSVY TSSFIAEIIR SGIQSVSHGQ HEAARSLGLP
NPVTLRKVIL PQALRVIIPP LTSQYLNIVK NSSLAAAIGY PDMVSLFAGT VLNQTGQAIE
TIAITMSVYL IISLLISLLM NLYNRKIALV ER
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