| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0227 |
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| Symbol | |
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| ID | 8131140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 272584 |
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| End bp | 273672 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644863508 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_003015823 |
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| Protein GI | 253686633 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCATT ATACGCAAGG CCGTCAGTCT TCTCTGTTCA GAGCGATGCA GTGGGCACGG
CGTAATCTCT TCTCCAGTAT CAGCAATAGC CTGTTAACAC TATTTTGCCT CTGGCTATTG
TGGGTTGCCA TACCGCCGCT GCTCAATTGG GCGATCTTTC AGGCAAATTG GATTGGCACC
ACACGTAATG ACTGTACGCG TGACGGCGCC TGTTGGGTCT TCATTCACGC CAGATTTGGG
CATTTTATGT ATGGCCTGTA CCCGGCAGCG GAAATCTGGC GCATCAACTT TGCCCTCACC
ATCGGGTTGC TCAGTATTCT GCCGATGTTC CTGAAAAGTA TCCCCTATCG CGGACGCTAC
ATTGCCGTCT GGGCAGTGGC TTATCCGCTC ATTGCCTGGT GGTTGCTTTA CGGCGGTTTT
GGCGGGCTCA GCCGAGTGGA AACCTATCAG TGGGGCGGGC TCACGTTAAC GTTGATTATC
GCCGCCGTGG GTATCGCAGG TGCGTTACCG CTTGGCATCT TGCTCGCATT AGGGCGACGT
TCCACGCTGC CGATCGTTCG TATGCTTTCC GTTGTCTTCA TCGAGTTCTG GCGCGGCGTA
CCGCTCATCA CCGTACTTTT TATGTCATCC GTGATGCTGC CACTGTTTTT AACGGAAGGC
ACCACGATCG ACAAACTGCT CAGGGCGCTA GTCGGCGTTA TTTTATTCCA GTCCGCCTAT
GTCGCCGAGG TCGTTCGCGG AGGTTTGCAG GCGCTACCTA AAGGGCAGTA CGAAGCCGCT
GAATCTCTGG GCTTAGGCTA TTGGCGCATG CAGGGGCTGG TCATTCTCCC GCAAGCACTG
AAAATGGTTA TCCCAGGCTT GGTGAATACC ATTATTTCGC TCTTTAAAGA CACGAGTCTG
GTGATCATCA TCGGCCTTTT CGATCTCTTC AGCAGCATCC AACAGGCAAC GGTTGACCCC
ACCTGGCTGG GGATGTCGAC GGAAGGCTAT GTCTTCGCCG CTATGGTCTA CTGGATTTTC
TGTTTCAGCA TGTCGCGCTA TAGCCAACAT CTGGAAAGTC GTTTTAACAC CGGACACAAG
TCACACTGA
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| Protein sequence | MNHYTQGRQS SLFRAMQWAR RNLFSSISNS LLTLFCLWLL WVAIPPLLNW AIFQANWIGT
TRNDCTRDGA CWVFIHARFG HFMYGLYPAA EIWRINFALT IGLLSILPMF LKSIPYRGRY
IAVWAVAYPL IAWWLLYGGF GGLSRVETYQ WGGLTLTLII AAVGIAGALP LGILLALGRR
STLPIVRMLS VVFIEFWRGV PLITVLFMSS VMLPLFLTEG TTIDKLLRAL VGVILFQSAY
VAEVVRGGLQ ALPKGQYEAA ESLGLGYWRM QGLVILPQAL KMVIPGLVNT IISLFKDTSL
VIIIGLFDLF SSIQQATVDP TWLGMSTEGY VFAAMVYWIF CFSMSRYSQH LESRFNTGHK
SH
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