| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0206 |
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| Symbol | |
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| ID | 8131114 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 243588 |
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| End bp | 247811 |
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| Gene Length | 4224 bp |
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| Protein Length | 1407 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644863482 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_003015802 |
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| Protein GI | 253686612 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0804128 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAGACT TATTAAAGTT TCTGAAAGCG CAAACTAAAA CCGAAGAGTT TGATGCGATC
AAAATTGCTC TGGCCTCGCC AGACATGATC CGTTCGTGGT CTTTTGGTGA AGTTAAAAAG
CCAGAAACCA TCAACTACCG TACGTTTAAA CCTGAACGTG ACGGCCTTTT CTGCGCCCGT
ATCTTTGGGC CGGTAAAAGA TTATGAGTGC TTGTGCGGTA AGTATAAGCG CCTGAAACAC
CGCGGTGTTA TTTGTGAGAA GTGCGGCGTT GAAGTGACCC AGACCAAAGT GCGCCGTGAG
CGTATGGGCC ACATCGAGCT GGCTTCTCCG ACTGCGCACA TCTGGTTCCT GAAGTCACTG
CCTTCCCGTA TCGGTTTGCT GCTGGATATG CCGCTGCGTG ATATCGAGCG TGTGCTTTAT
TTTGAATCTT ATGTCGTGGT TGAAGGCGGC ATGACCAACC TTGAGCGCCG TCAGATCCTG
ACTGAAGAGC AGTATCTGGA TGCGCTGGAA GAGTTTGGTG ATGAATTCGA CGCGAAAATG
GGCGCCGAAG CGATCCAGGC TCTGCTGAAG AACATGGATC TGGAGCAGGA ATGCGAGCAG
CTGCGTGAAG AGCTGACCGA AACCAACTCC GAAACCAAAC GTAAGAAGCT GACAAAGCGT
ATTAAACTGC TGGAAGCATT CGTACAGTCT GGTAACAAAC CAGAGTGGAT GATCCTGACC
GTTCTGCCGG TACTGCCGCC AGATCTGCGT CCGTTGGTTC CGCTGGATGG TGGTCGTTTC
GCGACTTCCG ACCTGAACGA TCTGTATCGT CGCGTGATCA ACCGTAACAA CCGTCTGAAA
CGTCTGCTGG ATCTGGCTGC GCCAGACATC ATCGTACGTA ACGAAAAACG TATGTTGCAG
GAAGCGGTTG ATGCACTGTT GGATAACGGC CGTCGCGGTC GTGCGATCAC CGGTTCTAAC
AAACGTCCTC TGAAATCTTT GGCCGATATG ATCAAAGGTA AGCAGGGTCG TTTCCGTCAG
AACCTGCTTG GTAAGCGTGT TGACTACTCC GGTCGTTCTG TAATCACCGT TGGTCCATAC
CTGCGTCTGC ATCAGTGTGG TCTGCCGAAG AAAATGGCAC TGGAGCTGTT CAAACCGTTC
ATCTACGGCA AGCTGGAACT GCGTGGTCTT GCTACCACCA TTAAAGCCGC CAAGAAAATG
GTTGAGCGTG AAGAAGCCGT CGTATGGGAT ATCCTGGACG AAGTCATCCG CGAACACCCG
GTCCTGCTGA ACCGTGCACC AACACTGCAC CGTTTGGGTA TTCAGGCATT TGAACCGGTA
CTGATTGAAG GTAAGGCAAT CCAGCTGCAC CCGCTGGTTT GTGCGGCATA TAACGCCGAC
TTCGATGGTG ACCAGATGGC TGTACACGTA CCGTTGACGC TGGAAGCCCA GTTGGAAGCG
CGTGCGTTGA TGATGTCGAC CAACAACATC CTGTCCCCTG CGAATGGTGA GCCAATCATC
GTTCCTTCTC AGGACGTGGT ATTGGGTCTG TATTACATGA CGCGTGACTG TGTTAACGCC
AAAGGCGAAG GCATGGTGCT CACGGGTCCG AAAGAAGCTG AACGCGTTTA TCGTGCCGGC
CTGGCCTCTC TGCATGCGCG CGTTAAAGTG CGTATCACGG AAGAGATCAA GAGCATCGAA
GGCGATGTTA CGCATCAGAC GTCGATTATT GATACGACTA TCGGCCGTGC CATCCTGTGG
ATGATCGTAC CGAAAGGTCT GCCGTACTCG ATCGTTAACC AGCCTTTGGG CAAGAAAGCG
ATCTCCAAAA TGCTGAACAC CTGTTACCGC ATTTTGGGTC TGAAGCCGAC AGTTATCTTC
GCTGACCAGA CTATGTACAC CGGTTTTGCT TACGCGGCGC GCTCTGGTGC TTCCGTAGGT
ATCGATGACA TGGTTATCCC GGAGAAAAAA GCCGAGATTA TCGAAGAAGC CGAAACCGAA
GTGGCCGAGA TTCAGGAGCA GTTCCAGTCC GGTCTGGTTA CTGCGGGCGA ACGCTATAAC
AAAGTGATCG ATATCTGGGC TGCTGCGAAC GAACGTGTTG CGAAAGCGAT GATGGAAAAC
CTGTCCGTTG AGGATGTGGT TAACCGTGAT GGCGTGGTTG AGCAGCAGGT ATCTTTCAAC
AGCATCTTTA TGATGGCCGA CTCCGGTGCG CGTGGTTCTG CGGCACAGAT TCGTCAGTTG
GCGGGTATGC GTGGTCTGAT GGCGAAACCA GATGGTTCCA TCATCGAGAC GCCAATTACC
GCAAACTTCC GTGAAGGTCT GAACGTACTC CAGTACTTCA TCTCGACGCA CGGTGCGCGT
AAAGGTCTGG CGGATACCGC ACTGAAAACG GCGAACTCCG GTTATCTGAC TCGTCGTCTG
GTTGACGTTG CGCAGGATCT GGTTGTGACC GAAGACGATT GTGGTACCCA TGAAGGTATC
ATGATGACGC CGGTTATCGA GGGTGGTGAT GTTAAAGAGC CACTGCGTGA GCGCGTACTG
GGTCGTGTAA CGGCTGAAGA CGTGATCAAA CCGGGCACGG CGGATATTCT GGTTCCACGT
AACACGCTGC TGAACGAGCA GTGGTGTGAC ATGTTGGAAG AGAACTCCGT TGACGCCGTT
AAAGTACGTT CCGTTGTAAG CTGCGAAACC GACTTTGGCG TGTGCGCCAA TTGCTACGGT
CGCGATCTGG CTCGTGGTCA TATCATCAAC AAAGGTGAGG CCATCGGGGT TATCGCGGCA
CAGTCCATCG GTGAACCGGG TACACAGTTA ACCATGCGTA CGTTCCACAT CGGTGGTGCG
GCATCGCGTG CGGCAGCTGA GTCCAGCATT CAGGTGAAAA ACAAGGGTAG CCTGAAACTG
AGCAACGCGA AGTTCGTCGT GAACAGCAAC GGTAAACTGG TTATTACTTC ACGTAATACC
GAACTGAAAC TGATCGACGA ATTCGGACGT ACTAAAGAAA GCTATAAAGT GCCTTATGGT
GCGGCAATGG CGAAAGGTGA TGGTGCAGAA GTTAGCGGTG GCGAAACCGT AGCTAACTGG
GATCCACATA CCATGCCAGT TATCACCGAA GTGAGCGGTA ACATTCGCTT CACCGATATG
ATCGACGGTC AGACGATTAC TCGTCAGACC GACGAACTGA CCGGTTTGTC CTCTATCGTG
GTTCTGGATA GTGCAGAGCG TACCGGTAGC GGTAAAGACC TGCGCCCGGC ACTGAAAATC
GTTGATGACA AAGGTGAAGA CGTACTGATT CCAGGTACGG ATATGCCTGC TCAGTACTTC
CTGCCGGGCA AAGCGATCGT GCAGTTGGAA GACGGCGTGA AAATCAGCAG CGGTGATACT
CTGGCGCGTA TTCCTCAGGA ATCCGGCGGT ACCAAGGATA TTACCGGTGG TCTGCCACGC
GTAGCCGACC TGTTCGAAGC CCGTCGTCCG AAAGAGCCGG CTATTCTGGC AGAGATCAGC
GGTATCATTT CCTTCGGTAA AGAAACCAAA GGTAAACGCC GTCTGGTGAT TTCTCCGTTG
GATGGCAGCG ATGCTTACGA AGAGATGATT CCGAAATGGC GTCAGCTCAA CGTGTTCGAA
GGTGAAGTGG TGGAACGTGG TGACGTGGTT TCCGACGGCC CAGAGTCTCC GCACGATATC
CTGCGTCTGC GTGGCGTACA TGCAGTAACG CGTTATATCA CCAACGAAGT TCAGGAAGTT
TACCGTCTGC AAGGCGTTAA GATTAACGAT AAACACATCG AAGTTATCGT TCGTCAGATG
TTGCGTAAAG GCACCATCGT TAACGCAGGT AGCACCGAGT TCCTGGAAGG CGAACAGGCA
GAAGTGTCTC GCATCAAGAT TGCCAACCGT CAGTTGGAAG CGGATGGCAA GATTACGGCA
ACGTTCAGCC GCGATCTGCT GGGTATTACC AAAGCATCTC TGGCGACCGA GTCCTTCATT
TCTGCGGCAT CGTTCCAGGA AACCACTCGC GTACTGACCG AAGCCGCTGT TGCGGGTAAA
CGTGATGAAC TGCGTGGCCT GAAAGAGAAC GTTATCGTGG GTCGTCTGAT CCCAGCGGGT
ACGGGTTATG CGTACCATCA GGATCGTATG CGCCGCCGTC AGGCGGGTGA AGCGCCAATC
GTACCTCAGG TGAGTGCCGA TGAAGCTTCT GCTAACCTGG CAGAACTGCT GAACGCAGGC
TTTGGTAGCA GCGACGACGA ATAA
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| Protein sequence | MKDLLKFLKA QTKTEEFDAI KIALASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP TAHIWFLKSL
PSRIGLLLDM PLRDIERVLY FESYVVVEGG MTNLERRQIL TEEQYLDALE EFGDEFDAKM
GAEAIQALLK NMDLEQECEQ LREELTETNS ETKRKKLTKR IKLLEAFVQS GNKPEWMILT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY
LRLHQCGLPK KMALELFKPF IYGKLELRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRDCVNA KGEGMVLTGP KEAERVYRAG
LASLHARVKV RITEEIKSIE GDVTHQTSII DTTIGRAILW MIVPKGLPYS IVNQPLGKKA
ISKMLNTCYR ILGLKPTVIF ADQTMYTGFA YAARSGASVG IDDMVIPEKK AEIIEEAETE
VAEIQEQFQS GLVTAGERYN KVIDIWAAAN ERVAKAMMEN LSVEDVVNRD GVVEQQVSFN
SIFMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVT EDDCGTHEGI MMTPVIEGGD VKEPLRERVL
GRVTAEDVIK PGTADILVPR NTLLNEQWCD MLEENSVDAV KVRSVVSCET DFGVCANCYG
RDLARGHIIN KGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRAAAESSI QVKNKGSLKL
SNAKFVVNSN GKLVITSRNT ELKLIDEFGR TKESYKVPYG AAMAKGDGAE VSGGETVANW
DPHTMPVITE VSGNIRFTDM IDGQTITRQT DELTGLSSIV VLDSAERTGS GKDLRPALKI
VDDKGEDVLI PGTDMPAQYF LPGKAIVQLE DGVKISSGDT LARIPQESGG TKDITGGLPR
VADLFEARRP KEPAILAEIS GIISFGKETK GKRRLVISPL DGSDAYEEMI PKWRQLNVFE
GEVVERGDVV SDGPESPHDI LRLRGVHAVT RYITNEVQEV YRLQGVKIND KHIEVIVRQM
LRKGTIVNAG STEFLEGEQA EVSRIKIANR QLEADGKITA TFSRDLLGIT KASLATESFI
SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGYAYHQDRM RRRQAGEAPI
VPQVSADEAS ANLAELLNAG FGSSDDE
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