Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0205 |
Symbol | rpoB |
ID | 8131113 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 239453 |
End bp | 243481 |
Gene Length | 4029 bp |
Protein Length | 1342 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644863481 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_003015801 |
Protein GI | 253686611 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTTACT CCTATACCGA GAAAAAACGC ATTCGTAAGG ATTTTGGTAA ACGTCCACAG GTTTTGGACA TACCTTATCT CCTTTCTATC CAACTTGACT CGTTCCAGAA GTTTATCGAG CAAGACCCGG AAGGTCAGTA CGGTTTGGAA GCTGCATTCC GTTCTGTTTT CCCCATAAAA AGCTATAGCG GTAATTCAGA GCTGCAATAC GTTAGCTATC GCTTGGGCGA GCCAGTATTT GACGTTAAAG AATGTCAGAT CCGTGGTGTG ACGTTCTCTG CGCCGCTGCG CGTTAAACTG CGCCTGGTGA TCTACGAGCG CGAAGCGCCT GAAGGCACCG TTAAAGACAT CAAAGAACAA GAAGTTTACA TGGGCGAAAT TCCGCTCATG ACCGATAACG GTACCTTCGT GATCAACGGT ACTGAGCGCG TAATCGTGTC TCAGTTGCAC CGTAGTCCAG GTGTGTTCTT CGATAGCGAC AAAGGTAAAA CCCACTCTTC AGGTAAGGTG CTGTATAACG CACGTATTAT TCCTTACCGT GGTTCCTGGT TGGATTTCGA GTTTGATCCG AAGGATAACC TGTTTGTTCG TATCGACCGT CGCCGCAAAC TGCCTGCGAC CATTATCCTG CGTGCGCTGG GTTACTCCAC CGAGCAGATT CTCGATCTTT TCTTCGATAA AATTGTCTAT GAAATCAATG GCAATAAATT GCAGATGGAT CTGGTTCCTG AGCGCCTGCG TGGTGAAACC GCCTCGTTTG ATATCGAAGC GAACGGTAAA GTTTATATCG AAAAAGGCCG CCGTATCACT GCACGCCATA TCCGTCAGTT AGAGAAAGAC GGTATTGAGC GCATTGAAGT GCCTGTTGAA TATATCGCTG GCAAAGTTCT GTCCAAAGAC TATATCGACG AGAGCACCGG TGAACTGATC GGCGCAGCTA ACATGGAGCT GTCGCTGGAT CTGCTGGCTA AACTGAGCCA GTCTGGCCAC AAACGTATTG AGACTCTGTT CACCAACGAT CTTGATCATG GTGCATACAT GTCTGAAACC GTGCGTGTCG ATCCGTCAAA CGATCGCCTG AGCGCACTGG TTGAAATCTA TCGCATGATG CGTCCTGGTG AGCCGCCAAC GCGTGAAGCA GCAGAAACGC TGTTCGAGAA CCTGTTCTTC TCTGAAGACC GCTACGATCT GTCTGCGGTT GGTCGTATGA AGTTCAACCG TTCTCTGTTA CGTGATGAGA TCGAAGGTTC TGGTATCCTG AGCAAAGATG ACATCATCGA AGTGATGAAG AAGCTCATTG ATATCCGTAA CGGTAAAGGC GAAGTGGACG ATATCGACCA CCTCGGCAAC CGTCGTATCC GTTCCGTCGG CGAAATGGCA GAAAACCAAT TCCGCGTTGG TCTGGTGCGT GTAGAACGTG CTGTAAAAGA GCGTCTGTCT CTGGGCGACC TCGATACGCT GATGCCACAG GATATGATCA ACGCCAAGCC GATTTCGGCT GCCGTGAAAG AGTTCTTCGG TTCGAGCCAG CTGTCACAGT TTATGGACCA GAACAACCCG CTGTCCGAGA TTACGCACAA ACGTCGTATC TCTGCATTGG GCCCAGGTGG TCTGACGCGT GAACGCGCCG GCTTTGAAGT CCGTGACGTA CACCCAACTC ACTACGGCCG TGTTTGTCCT ATCGAAACGC CGGAAGGTCC AAACATCGGT CTGATCAACT CCCTGTCCGT TTATGCGCAA ACGAACGAGT ACGGTTTCCT TGAAACCCCA TATCGTCGTG TGCGTGACAA CGTGGTGACG GATGAGATCC ATTACCTGTC TGCGATTGAA GAAGGTAACT TCGTTATCGC ACAGGCGAAC ACCAATTTGG ACGAAGAAGG CCGCTTCATC GACGAACTGG TTACCTGCCG TAACAAAGGC GAGTCCAGCT TGTTCAGCCG CGATCAGGTT GAATACATGG ACGTTTCCAC ACAGCAGGTG GTTTCCGTCG GTGCATCCCT GATTCCGTTC CTGGAACACG ATGACGCCAA CCGTGCCCTG ATGGGTGCGA ACATGCAACG TCAGGCCGTT CCGACCCTGC GCGCTGATAA GCCGCTGGTT GGTACCGGTA TGGAACGTGC TGTTGCGGTT GACTCCGGTG TAACTGCCGT AGCCAAACGT GGTGGTACAG TACAGTACGT GGATGCATCC CGTATTGTAA TTCGCGTTAA TGACGATGAA ATGTATCCGG GCGAAGCCGG GATCGACATC TATAACCTGA CCAAATATAC CCGTTCTAAC CAGAACACCT GCATCAGCCA GATGCCGTGT GTTTCTCTGG GTGAGCCGGT AGAACGTGGC GACGTTCTGG CAGATGGCCC GTCCACCGAT CTGGGTGAAC TGGCGCTGGG TCAGAACATG CGCGTGGCAT TCATGCCATG GAATGGTTAC AACTTCGAAG ACTCCATCCT CGTTTCTGAG CGTGTAGTTC AGGAAGATCG CTTTACGACC ATCCATATTC AGGAACTTGC CTGTGTGTCT CGTGACACCA AGTTAGGGCC TGAAGAAATT ACTGCGGACA TCCCGAACGT GGGTGAAGCA GCACTTTCCA AACTGGATGA GTCCGGCATT GTTTACATCG GTGCGGAAGT GACCGGTGGT GACATTCTGG TTGGTAAGGT TACGCCGAAA GGTGAAACCC AGCTGACGCC AGAAGAAAAA CTGCTGCGTG CGATCTTCGG TGAGAAAGCG TCTGACGTTA AAGACTCTTC TCTGCGTGTA CCAAACGGTG TTTCCGGTAC GATTATCGAC GTACAGGTCT TTACCCGCGA TGGCGTGGAA AAAGACAAGC GTGCGTTGGA AATCGAAGAA ATGCAGCTGA AGCAGGCGAA GAAAGACCTG ACTGAAGAAT TGCAGATTCT GGAAGCGGGC CTGTTTGCAC GTATCCACGC TGTGCTGGTT TCCGGCGGCG TAGAAGCCGA CAAACTGGAC AAACTGCCGC GTGAGCGCTG GTTGGAACTG GGTCTGACTG ATGAAGATAA ACAGAATCAG TTGGAACAGT TGGCAGAACA GTATGATGAG CTGAAGCACG AGTTTGAGAA AAAACTCGAA GCTAAGCGCC GTAAAATCAC TCAGGGCGAT GATCTGGCAC CGGGCGTGCT GAAAATCGTT AAGGTTTATC TGGCTGTTAA ACGTCAGATC CAACCGGGTG ACAAAATGGC AGGTCGTCAC GGGAACAAAG GTGTTATCTC CAAGATCAAC CCGATCGAAG ATATGCCTTA CGATGAGAAC GGTACGCCGG TCGATATCGT ACTGAACCCG CTGGGCGTAC CTTCACGTAT GAACATTGGT CAGATTCTGG AAACCCACCT GGGTATGGCT GCGAAAGGTA TCGGCGAGAA AATCAACGCC ATGCTCAAGC AGCACGAAGA AGTGACTAAA CTGCGTGAGT TCATCCAGAG AGCCTACGAT CTGGGCGACG ATGTGCGTCA GAAAGTCGAC CTGAGCACTT TCTCAGACGA AGAAGTTATG CGTCTGGCTG AAAACCTGAA GAAAGGTATG CCAATTGCAA CGCCGGTATT CGACGGTGCA AAAGAGAAAG AAATCAAGGA ACTGTTGCAG ATGGGCGGTA TCCCTACCTC CGGTCAGATT ACCCTGTACG ATGGACGTAC CGGTGAGAAA TTTGAGCGTC AGGTTACAGT GGGCTACATG TACATGCTGA AACTGAACCA CTTGGTTGAC GATAAGATGC ATGCTCGTTC CACCGGTTCT TACAGCCTGG TTACTCAGCA GCCGCTGGGT GGTAAGGCTC AATTCGGTGG TCAACGCTTC GGTGAGATGG AAGTGTGGGC GCTGGAAGCT TATGGTGCAG CTTATACCCT GCAAGAAATG TTGACCGTTA AGTCTGATGA CGTGAACGGC CGTACCAAGA TGTATAAGAA CATCGTGGAT GGCAATCATC AGATGGAACC AGGCATGCCG GAATCCTTCA ACGTACTGTT GAAAGAAATC CGCTCGCTGG GTATCAACAT CGAGCTGGAA GAAGAGTAA
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Protein sequence | MVYSYTEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFQKFIE QDPEGQYGLE AAFRSVFPIK SYSGNSELQY VSYRLGEPVF DVKECQIRGV TFSAPLRVKL RLVIYEREAP EGTVKDIKEQ EVYMGEIPLM TDNGTFVING TERVIVSQLH RSPGVFFDSD KGKTHSSGKV LYNARIIPYR GSWLDFEFDP KDNLFVRIDR RRKLPATIIL RALGYSTEQI LDLFFDKIVY EINGNKLQMD LVPERLRGET ASFDIEANGK VYIEKGRRIT ARHIRQLEKD GIERIEVPVE YIAGKVLSKD YIDESTGELI GAANMELSLD LLAKLSQSGH KRIETLFTND LDHGAYMSET VRVDPSNDRL SALVEIYRMM RPGEPPTREA AETLFENLFF SEDRYDLSAV GRMKFNRSLL RDEIEGSGIL SKDDIIEVMK KLIDIRNGKG EVDDIDHLGN RRIRSVGEMA ENQFRVGLVR VERAVKERLS LGDLDTLMPQ DMINAKPISA AVKEFFGSSQ LSQFMDQNNP LSEITHKRRI SALGPGGLTR ERAGFEVRDV HPTHYGRVCP IETPEGPNIG LINSLSVYAQ TNEYGFLETP YRRVRDNVVT DEIHYLSAIE EGNFVIAQAN TNLDEEGRFI DELVTCRNKG ESSLFSRDQV EYMDVSTQQV VSVGASLIPF LEHDDANRAL MGANMQRQAV PTLRADKPLV GTGMERAVAV DSGVTAVAKR GGTVQYVDAS RIVIRVNDDE MYPGEAGIDI YNLTKYTRSN QNTCISQMPC VSLGEPVERG DVLADGPSTD LGELALGQNM RVAFMPWNGY NFEDSILVSE RVVQEDRFTT IHIQELACVS RDTKLGPEEI TADIPNVGEA ALSKLDESGI VYIGAEVTGG DILVGKVTPK GETQLTPEEK LLRAIFGEKA SDVKDSSLRV PNGVSGTIID VQVFTRDGVE KDKRALEIEE MQLKQAKKDL TEELQILEAG LFARIHAVLV SGGVEADKLD KLPRERWLEL GLTDEDKQNQ LEQLAEQYDE LKHEFEKKLE AKRRKITQGD DLAPGVLKIV KVYLAVKRQI QPGDKMAGRH GNKGVISKIN PIEDMPYDEN GTPVDIVLNP LGVPSRMNIG QILETHLGMA AKGIGEKINA MLKQHEEVTK LREFIQRAYD LGDDVRQKVD LSTFSDEEVM RLAENLKKGM PIATPVFDGA KEKEIKELLQ MGGIPTSGQI TLYDGRTGEK FERQVTVGYM YMLKLNHLVD DKMHARSTGS YSLVTQQPLG GKAQFGGQRF GEMEVWALEA YGAAYTLQEM LTVKSDDVNG RTKMYKNIVD GNHQMEPGMP ESFNVLLKEI RSLGINIELE EE
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