| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0126 |
|---|
| Symbol | |
|---|
| ID | 8131026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 152240 |
|---|
| End bp | 153127 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644863396 |
|---|
| Product | glycerol-3-phosphate transporter permease |
|---|
| Protein accession | YP_003015724 |
|---|
| Protein GI | 253686534 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATCAT CCCGCCCCGT TTTTCGCAGC AGTTGGTTGC CTTACGTGCT GGTGTTACCT
CAACTGCTGA TTACCGTGAT TTTCTTTATC TGGCCCGCTG GCCAGGCGCT GTGGTATTCG
GTGCAGAATC TCGATCCGTT TGGGTTATCC AGCGAATTTG TCGGCATGGA AAACTTCAAG
CAACTGTTCA ATAACCCTTA CTACCTCGAT TCGTTCTATA CCACGCTGAT ATTCAGCTTT
CTGGTCGCCG GGTTTGGCAT GCTGATTTCA CTCTTTCTGG CCGCGCTGGT GGACTATGTG
ATCCGTGCCA GTCGCCTGTA CCAGACGTTG ATCATCCTGC CCTATGCTGT GGCACCTGCC
GTCGCTGCCG TATTGTGGAT GTTCTTATTT AACCCCGGTC TGGGGCTGAT TACCCATTTT
CTCGGGCTGA TGGGCTACAC GTGGAACCAC GCGCAGCACA GCGGTCAGGC GATGTTTTTA
GTCGTCCTTG CGTCGGTCTG GAAGCAGATT AGCTATAACT TCCTGTTCTT TCTCGCGGCG
CTGCAATCGA TCCCCCGTTC ACTGGTAGAA GCGGGCGCGA TTGATGGCGC TGGGCCCGTA
CGGCGTTTCT TCAATCTGGT GTTACCCATG ATCTCACCGG TGAGCTTCTT CCTGCTGGTG
GTCAATCTGG TGTACGCCTT TTTCGACACC TTCCCGATTA TCGATGCCGC GACGGCCGGT
GGGCCAGTGC AGTCGACGAC CACGCTGATC TACAAAATTT ATCGCGAGGG CTTCGCAGGG
CTGGATCTGT CCAGTTCGGC AGCGCAGTCG GTGGTGCTGA TGATGCTGGT TATCGGGCTG
ACCATTATTC AGTTCCGTTT TGTTGAACGG AAGGTGAACT ATCAATGA
|
|---|
| Protein sequence | MTSSRPVFRS SWLPYVLVLP QLLITVIFFI WPAGQALWYS VQNLDPFGLS SEFVGMENFK
QLFNNPYYLD SFYTTLIFSF LVAGFGMLIS LFLAALVDYV IRASRLYQTL IILPYAVAPA
VAAVLWMFLF NPGLGLITHF LGLMGYTWNH AQHSGQAMFL VVLASVWKQI SYNFLFFLAA
LQSIPRSLVE AGAIDGAGPV RRFFNLVLPM ISPVSFFLLV VNLVYAFFDT FPIIDAATAG
GPVQSTTTLI YKIYREGFAG LDLSSSAAQS VVLMMLVIGL TIIQFRFVER KVNYQ
|
|---|
| |