| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0117 |
|---|
| Symbol | |
|---|
| ID | 8131017 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 145134 |
|---|
| End bp | 146408 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644863387 |
|---|
| Product | type III effector Hrp-dependent outers |
|---|
| Protein accession | YP_003015715 |
|---|
| Protein GI | 253686525 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3395] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAGC TAGGTGTGAT CGCCGATGAT TTTACCGGCG CAACGGATAT CGCCAGCTTT
CTGGTCAACA ACGGGCTGCC GACCGTACAA CTCAACGGTG TACCGCCGTC CGATTTTAAG
GTCGACACGC AGGCCGTGGT CATTAGCCTG AAATCGCGCT CCTGTCCGGC GGAACAGGCC
GTGGCGGATT CACTCAAGGC GCTGGCATGG CTGCAACAGC AGGGCTGCCA GCAGTTCTAC
TTTAAATATT GCTCCACCTT CGACAGCACA GCAAAAGGCA ACATCGGTCC GGTAACCGAT
GCGCTGTTGG AACAGCTCGG TGAAACGCAG ACCATCATCT CTCCAGCGCT GCCGGTGAAC
GGCAGAACCG TCTATCAAGG GCATTTATTC GTGATGGATC AGCTGTTGTC AGAATCCGGG
ATGCGCCACC ATCCGGTTAC ACCGATGACG GACAGCAACC TGATGCGCGT CATGGAACAG
CAGGCGGCGG GGCAATGCGG TCTGGTGCCG TATGCCGTGA TGGATCAGGG CGCGGAAGCC
GTCAAACAGC GGCTGGCACA GTTGAAAGAA CAGGGCATCC GCTATGTGGT GCTGGATACG
TTGAACGAAC AACACCTGCT AACACAGGGT GAAGCACTGC GCGACATGAA ACTGGTCACT
GGCGGTTCCG GCCTGGCGAT TGGTCTGGCA CGCCAGCTGG CAGACTCAAC AAAACAAACC
GGTTCCGCCA CCGAGGCAGG CAAGCCACAA TCCGGCGCAG GCGTTGTGCT ATCCGGCTCC
TGCTCAGTGA TGACCAACAA GCAGGTCGCT CATTACCTGA AACAGGCGGC GGGTCGCGCG
ATTGACGTCG CTCGCTGCCT GGAAAGCGAT GATGCCCAGC AAGCCTACGT TCAGGAACTG
GCCGACTGGG TAAAAGCACA TCGCGACGAC GCACTCGCGC CGCTGCTATA CGCCACGTCA
TCACCCGACG AACTGGCGCA GATTCAGCAG CGCTGGGGCG CAGAAGCCAG CAGTCAGGCA
GTGGAGAAAC TGTTTGCCGC CGTCGCCCGC CAGCTTCAGC AGGATGGCTT CCAGCGCTTC
ATCATTGCGG GCGGGGAAAC CTCCAGCATC GTGGTGCAAA CGCTGGGCAT TCACGCGTTC
CATATCGGGC CATCCATTTC TCCCGGCGTG CCGTGGGTAC GTTCCACCAA TCATCCGCTT
TCGCTGGCGT TGAAATCCGG CAATTTCGGT GATGAAGACT TTTTTGCCCG CGCTCAAAAG
GAGTTTGCCG CATGA
|
|---|
| Protein sequence | MIKLGVIADD FTGATDIASF LVNNGLPTVQ LNGVPPSDFK VDTQAVVISL KSRSCPAEQA
VADSLKALAW LQQQGCQQFY FKYCSTFDST AKGNIGPVTD ALLEQLGETQ TIISPALPVN
GRTVYQGHLF VMDQLLSESG MRHHPVTPMT DSNLMRVMEQ QAAGQCGLVP YAVMDQGAEA
VKQRLAQLKE QGIRYVVLDT LNEQHLLTQG EALRDMKLVT GGSGLAIGLA RQLADSTKQT
GSATEAGKPQ SGAGVVLSGS CSVMTNKQVA HYLKQAAGRA IDVARCLESD DAQQAYVQEL
ADWVKAHRDD ALAPLLYATS SPDELAQIQQ RWGAEASSQA VEKLFAAVAR QLQQDGFQRF
IIAGGETSSI VVQTLGIHAF HIGPSISPGV PWVRSTNHPL SLALKSGNFG DEDFFARAQK
EFAA
|
|---|
| |