Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0102 |
Symbol | |
ID | 8131002 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 125319 |
End bp | 126176 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644863372 |
Product | RNA polymerase factor sigma-32 |
Protein accession | YP_003015700 |
Protein GI | 253686510 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.911847 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCAAAG ATATGCAAAC TTTCACCTTA GTTCCCCAGG GCAGTCTGGA AGGGTATATT CGTGCCGCCA ATGCCTATCC GATGCTGACG GCGGAGGAAG AGCGGGCGCT GGCTGAACGG CTGCATTATC AGGGCGATCT GGATGCGGCT AAGCACCTGA TTCTGTCACA CCTGCGTTTT GTTATTCACG TTGCCCGTAA CTATTCCGGC TACGGCCTGC CGCAGGCGGA CCTGATTCAG GAAGGGAACA TCGGCCTGAT GAAGGCGGTA CGTCGCTTTA ACCCTGAAGT GGGCGTGCGT CTGGTTTCTT TCGCCGTGCA CTGGATCAAA GCAGAAATTC ATGAATACGT GCTGCGTAAC TGGCGTATCG TGAAAGTCGC GACCACCAAA GCACAGCGTA AACTGTTCTT TAACCTGCGG AAGACGAAAA CGCGTCTCGG TTGGTTTAAC CAAGATGAAG TCGAACTGGT GGCACGTGAA CTGGGTGTGA CCAGCAAAGA CGTGCGCGAG ATGGAATCCC GTATGGCGGC GCAGGACATG ACGTTCGATC CAACGCCGGA AGAAGATTCG CACGACGGTA AGGCGATGTC GCCGATGCTT TACCTACAAG ATAAATCGTC TGACTTTGCC GACGGCATTG AAGAAGATAA CTGGGACACG CATGCGGCGG ATAAGCTCAC TTACGCGCTG GAAGGGCTGG ATGAACGCAG CCAGCATATT ATCCGTGCCC GTTGGCTGGA TGATGACAAC AAATCCACCT TGCAGGAACT GGCCGATCAA TACGGCGTTT CCGCAGAGCG TGTTCGTCAG TTAGAAAAGA ATGCGATGAA AAAACTGCGA GCGGCGATAG AAGCGTAA
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Protein sequence | MTKDMQTFTL VPQGSLEGYI RAANAYPMLT AEEERALAER LHYQGDLDAA KHLILSHLRF VIHVARNYSG YGLPQADLIQ EGNIGLMKAV RRFNPEVGVR LVSFAVHWIK AEIHEYVLRN WRIVKVATTK AQRKLFFNLR KTKTRLGWFN QDEVELVARE LGVTSKDVRE MESRMAAQDM TFDPTPEEDS HDGKAMSPML YLQDKSSDFA DGIEEDNWDT HAADKLTYAL EGLDERSQHI IRARWLDDDN KSTLQELADQ YGVSAERVRQ LEKNAMKKLR AAIEA
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