Gene PC1_0098 details

Gene Information

• Locus tag: PC1_0098
• Symbol: rsmD
• ID: 8130998
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: -
• Start bp: 120939
• End bp: 121514
• Gene Length: 576 bp
• Protein Length: 191 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 644863368
• Product: 16S rRNA m(2)G966-methyltransferase
• Protein accession: YP_003015696
• Protein GI: 253686506
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0742] N6-adenine-specific methylase
• TIGRFAM ID: [TIGR00095] RNA methyltransferase, RsmD family

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAAAA AAAACGCATC GTCAGCCGCC GGACAAATCC GAATCATCGG TGGTCAATGG 
CGCGGCAGAA AACTTCCGGT TCCTGATAGC CCCGGTTTAC GTCCCACCAC CGACCGCGTG 
CGGGAAACGC TGTTTAACTG GCTGGCTCCC ATCATTCAAC AGGCACGCTG CCTGGACTGT 
TTCGCTGGCA GCGGCGCACT CGGGCTGGAA GCCTTATCTC GTTATGCTGC TCACGCCACA 
TTATTGGAAA TGGAACGTGC AGTCGCCCAG CAATTAACGC AAAATCTGGC GCTGCTTCGG 
GCGGAAAATG CTGAGGTGGT CAATACTGAT GCCCTGAGCT GGCTGGCGCA GCCTGGTACG 
CCGTTTGACG TCGTGTTTCT CGACCCACCG TTTCGCAAAG AGCTGCTGAA CAACACGCTC 
GTGCTGCTGG AACAACAGGG CTGGCTAGCA CCCGATGCGT GGATTTACGT GGAAACCGAG 
GCGGAAAATG CGCAGCTGAC TATCCCAGAA AATTGGCAAC TGCACCGTGA GAAAATTGCA 
GGTCAGGTCG CCTACCGTTT GTACATCCGT CAGTGA 

 

Protein sequence

MAKKNASSAA GQIRIIGGQW RGRKLPVPDS PGLRPTTDRV RETLFNWLAP IIQQARCLDC 
FAGSGALGLE ALSRYAAHAT LLEMERAVAQ QLTQNLALLR AENAEVVNTD ALSWLAQPGT 
PFDVVFLDPP FRKELLNNTL VLLEQQGWLA PDAWIYVETE AENAQLTIPE NWQLHREKIA 
GQVAYRLYIR Q