Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0088 |
Symbol | |
ID | 8130988 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 113478 |
End bp | 114677 |
Gene Length | 1200 bp |
Protein Length | 399 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 644863358 |
Product | major facilitator superfamily transporter |
Protein accession | YP_003015686 |
Protein GI | 253686496 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAACAC CTTCCCCATC CGAACCGGCG CTGAGCGGTC TGCGCCTTAA TCTGCGCATC GTTTCAATTG TGGCGTTCAA CTTCGCCAGC TATCTGAATA TTGGCCTGCC GTTGGCGGTG TTGCCGGGGT ATGTGCATGA CCACCTTGGC TATAGCGCGT TCTGGGCCGG TCTGGTGATC AGCCTGCAAT ATTTTTCCAC GTTGTTGACC CGCCCGCACG CGGGGCGTAG CGCCGATGAA AAAGGACCGA AAAAAATCGT CGTTTGGGGG CTGGCTGGCG TCATGCTGAG CGGGGTGTTT TACCTGCTGG CCGCTTTTAG TGATGCATCG CCCGCGATCA CGCTGCTGCT ACTGTGTCTC GGGCGCGTTG TGCTGGGGGC TGGGCAGAGT TTTGCCGGGA CAGGTGCAAC GCTCTGGGGC GTTGGTGTGG TCGGTTCCCG ACACATCGGG CGTGTGATTT CATGGAATGG CATTGCCACT TACGGCGCGA TGGCGATTGG CGCACCGCTC GGCGTCTGGC TCAACCATAT CGGTGGGCTA AAACTGCTCT CCGTGTGCAT AATCCTGATT GCGGCGGTGG CGATTGTTCT CGCGCTGCCG CGCCCGACGG TGCAGGTCGC GCCGGGGAAA AAGATTCCCT TCCGCGAAGT GCTGGGGAAA GTCTGGGTTT ACGGCATTAT TCTGGCAATC GCCTCAGCAG GTTTTGGCGT GATCGCCACC TTTATCACGC TGTTTTATGC CGATAGGAAC TGGGAAGGTG CCGCGCTGAC GCTGACGATT TTCAGCTGCG CTTTTGTCGG TGCGCGATTG GTGTTTCCTA ACAGCATTCA GCGGTTTGGT GGATTGCGCG TAGCGATGGC GTGCTTTGTG GTTGAGATCG TGGGGTTATT GCTGGTGTGG GGGGCGGCGC TGCCGTTGAT GGCCGAAGTC GGCGCATTCC TCGCGGGGGC GGGTTTCTCT TTGGTGTTCC CGGCATTAGG CGTGGTTGCC GTTCAGGCTG TCTCGCCGCA GAATCAGGGC AGCGCACTGG CGACCTATAC GATATTTCTC GATTTGTCGC TGGGCATCGT CGGGCCAGTG GCGGGTGTGC TGATGGCCTA TACCGGTATC GCCTCTATTT ATCTGGCGGC GGCGTTGCTG GGGCTATGTG GTCTGGCGCT GACGTGGCGG CTGACTCAGC GCACGGCAGT CAAAGAATAA
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Protein sequence | MPTPSPSEPA LSGLRLNLRI VSIVAFNFAS YLNIGLPLAV LPGYVHDHLG YSAFWAGLVI SLQYFSTLLT RPHAGRSADE KGPKKIVVWG LAGVMLSGVF YLLAAFSDAS PAITLLLLCL GRVVLGAGQS FAGTGATLWG VGVVGSRHIG RVISWNGIAT YGAMAIGAPL GVWLNHIGGL KLLSVCIILI AAVAIVLALP RPTVQVAPGK KIPFREVLGK VWVYGIILAI ASAGFGVIAT FITLFYADRN WEGAALTLTI FSCAFVGARL VFPNSIQRFG GLRVAMACFV VEIVGLLLVW GAALPLMAEV GAFLAGAGFS LVFPALGVVA VQAVSPQNQG SALATYTIFL DLSLGIVGPV AGVLMAYTGI ASIYLAAALL GLCGLALTWR LTQRTAVKE
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