Gene PC1_0088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0088 
Symbol 
ID8130988 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp113478 
End bp114677 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content59% 
IMG OID644863358 
Productmajor facilitator superfamily transporter 
Protein accessionYP_003015686 
Protein GI253686496 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAACAC CTTCCCCATC CGAACCGGCG CTGAGCGGTC TGCGCCTTAA TCTGCGCATC 
GTTTCAATTG TGGCGTTCAA CTTCGCCAGC TATCTGAATA TTGGCCTGCC GTTGGCGGTG
TTGCCGGGGT ATGTGCATGA CCACCTTGGC TATAGCGCGT TCTGGGCCGG TCTGGTGATC
AGCCTGCAAT ATTTTTCCAC GTTGTTGACC CGCCCGCACG CGGGGCGTAG CGCCGATGAA
AAAGGACCGA AAAAAATCGT CGTTTGGGGG CTGGCTGGCG TCATGCTGAG CGGGGTGTTT
TACCTGCTGG CCGCTTTTAG TGATGCATCG CCCGCGATCA CGCTGCTGCT ACTGTGTCTC
GGGCGCGTTG TGCTGGGGGC TGGGCAGAGT TTTGCCGGGA CAGGTGCAAC GCTCTGGGGC
GTTGGTGTGG TCGGTTCCCG ACACATCGGG CGTGTGATTT CATGGAATGG CATTGCCACT
TACGGCGCGA TGGCGATTGG CGCACCGCTC GGCGTCTGGC TCAACCATAT CGGTGGGCTA
AAACTGCTCT CCGTGTGCAT AATCCTGATT GCGGCGGTGG CGATTGTTCT CGCGCTGCCG
CGCCCGACGG TGCAGGTCGC GCCGGGGAAA AAGATTCCCT TCCGCGAAGT GCTGGGGAAA
GTCTGGGTTT ACGGCATTAT TCTGGCAATC GCCTCAGCAG GTTTTGGCGT GATCGCCACC
TTTATCACGC TGTTTTATGC CGATAGGAAC TGGGAAGGTG CCGCGCTGAC GCTGACGATT
TTCAGCTGCG CTTTTGTCGG TGCGCGATTG GTGTTTCCTA ACAGCATTCA GCGGTTTGGT
GGATTGCGCG TAGCGATGGC GTGCTTTGTG GTTGAGATCG TGGGGTTATT GCTGGTGTGG
GGGGCGGCGC TGCCGTTGAT GGCCGAAGTC GGCGCATTCC TCGCGGGGGC GGGTTTCTCT
TTGGTGTTCC CGGCATTAGG CGTGGTTGCC GTTCAGGCTG TCTCGCCGCA GAATCAGGGC
AGCGCACTGG CGACCTATAC GATATTTCTC GATTTGTCGC TGGGCATCGT CGGGCCAGTG
GCGGGTGTGC TGATGGCCTA TACCGGTATC GCCTCTATTT ATCTGGCGGC GGCGTTGCTG
GGGCTATGTG GTCTGGCGCT GACGTGGCGG CTGACTCAGC GCACGGCAGT CAAAGAATAA
 
Protein sequence
MPTPSPSEPA LSGLRLNLRI VSIVAFNFAS YLNIGLPLAV LPGYVHDHLG YSAFWAGLVI 
SLQYFSTLLT RPHAGRSADE KGPKKIVVWG LAGVMLSGVF YLLAAFSDAS PAITLLLLCL
GRVVLGAGQS FAGTGATLWG VGVVGSRHIG RVISWNGIAT YGAMAIGAPL GVWLNHIGGL
KLLSVCIILI AAVAIVLALP RPTVQVAPGK KIPFREVLGK VWVYGIILAI ASAGFGVIAT
FITLFYADRN WEGAALTLTI FSCAFVGARL VFPNSIQRFG GLRVAMACFV VEIVGLLLVW
GAALPLMAEV GAFLAGAGFS LVFPALGVVA VQAVSPQNQG SALATYTIFL DLSLGIVGPV
AGVLMAYTGI ASIYLAAALL GLCGLALTWR LTQRTAVKE