Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0065 |
Symbol | |
ID | 8130965 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 76395 |
End bp | 81566 |
Gene Length | 5172 bp |
Protein Length | 1723 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644863335 |
Product | filamentous hemagglutinin family outer membrane protein |
Protein accession | YP_003015663 |
Protein GI | 253686473 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01731] adhesin HecA family 20-residue repeat (two copies) [TIGR01901] filamentous haemagglutinin family N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.290227 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAAAT TCAATAACCG CGCCACACGC GGACTTAGCT ATCTGCTGAT CTATCTGACC GCGATTCAGC CGTTACACCC CGCGTTCGCG GCACTCACAC CAGACGGCCC ACGCACGCAG GTCAACAACG CGGGCGCCGT CCCGGTCATC AATATCGCGA CGCCAAACGC AGCGGGTGTT TCTCACAATA CCTATAAAGA TTTTAGCGTC GGGACGCCCG GTGCCGTACT CAACAACAGC ATTGCCGCAG GCCAATCGCA GTTGGCCGGG CAGTTAAACG CTAACGCCAA CCTCAATGGC AAAGCGGCCG AGCTGATTAT CAACGAGGTG ACGGGCTCAA CCCGTTCAGA CCTGCAAGGG AAGATCGAAG TCTTCGGGCA TAAAGCCAAC GTATTGATTG CCAACCCGAA TGGCATTACC TGTGATGGAT GTGGGTTCAT CAACACACCT TCAGCCACGC TGACGACGGG TAAACCGGTG CTGGATCAGC AAGGCGCCCT GGAAGCGTTG GAAGTGAAAA AAGGCAGCAT CACCATTGGT GGAAAAGGCC TGGACGGTTC AGCAACGGAT TATGTCGATA TCCTCAGCCG GGCAACTGAA CTGAACGGCA AAATCAACGC AAAAAACCTG ACGCTGACTC AAGGCAGCAA TCGGGTCGAT GTCAAAACCG GCACGGTCGC CCCCATCGCC GGAGAAGGTG CCAAACCGCT GCTGGCGGTG GATACCAAAG CGCTCGGCGG TATGTATGCA GAACGCATCC GGCTTGTGGC AACCGAGGAC GGAGTCGGCG CTAACGTCGC TAACCTGACC AGCTCTCAGC AAGGCATTAC GCTGGACAGC AAAGGTAAAA TCCAGCTCGG TAATGTGCAC GCGAAAACCG ACCTTAATCT GACCGCACAG CAGGTCGATA TTGCTGCTGG CAATACGGTG AAAAGCGACC GAGATATCAC GCTTGCCAGT ACCGTATTAA ATAACCGAGG GAATATCATC GCGGGCGAAG ATATGCGCCT GTTCAACGAT AGCCTAACCA ACACGCAGGC CACTATTCAG GCCAACAACA ACCTGTGGAT CCAAAAAGAC GCGACGGGGA ACAAAGGCGT TAAAGTCGAA AACCGCTCGG GGACGATTAA AACCAATACG GGGGATTTGG TGATTCGGAC TGAGCAGTTG GATAATGTCG TCGAGCAGTT CTCGGTTAAT AAAATCAGCA CACCAGCAAA TTCAACATCA ATTGATGGCC AATTTGGAAT AATGATTGAT GGCACGGGAC CTGATTCATT CGTTACCATC TATACTGGTG TAGTAGATGA TAGGAATCTA CGTTGGATTG GCAGTTTTAA ATTTACAGAA AGTCCTTACG CTAATACAGA AAAAAATAAA TACACATTTA TTTCCAGCAG GGAAGGAAAC ATTTCATCAG GAAAAAATAT CTATATAAAC TCATCTGAAC TGAATAACAA ATACAGTACT ATTTCCGCAC TTGGAGACAT TATCTCCACT GGAAAAAATG CAAATATACT TAACCATTCA ATCGGTGATT CAAATAGTTA TGTTAAATTA GCCCTTAAAT TCGACGAGAG GGACATTGGC ATTGATATTT CACCAATCCC TGCTGGTTTT AATGTCGATG AATATCCATT ATGGGGAGAT GCACCAGTTC CCTTGGTTCG GGATGGCAAT AAAAAAACCT GGTTTGAAAA AGAATATGTT AGTAGCAAAA TACATGCAGG TGGCAGTCTT GTTTTAGATT TCACTGATAC AATAAAGATC GAGGATAACG CCCCCGAGAA TCTTACTGAA CTTTCTGAGA AAATTTACTC AACGCCACAT TCCTATAGCA TCACAGGGAA AGAAATTATC TTTAAGTCCA AAGATATAAA AAACCAAAGT TCCGTAAAGT CAACAGGAAA TCTGAGTCTA TTATCTGAAG GAAATATAAA ACTAACTGGT GGTGAGCTGA ACTCGGCAGG TGATCTTTCT ATCCTCGCAA GTAATGGCAT TGATGCAAAT CAAAATAAAT TCTTAGGAAG AAATATTACA ATTATAAGTC GTGAAGGAGA TACTTCACTT TATACCGACA GCGCCGCAAA GCATTTCTCC GTTGATGGAG TTCGTCAATT CAGTACATTA AATGCAACAG AAAACCTATC TATTCAGTCG GGGAAAGACA TTCTATTAAA TGGCATTGAA ATAGGAAAAG CAAAAAATAT TTCACTTATT TCAGGAAATA ACATTACAGT TAAAAATGAT GAGGCTATTT TAGACCCTCA AAAAATTGGC AGTACGTTCA CCGATCCCGA AAAACAGAAA AAATTTGATT ATGCTTTTAA CCACCTTGGG AACATTACTT CAACAGACAG CATTACGTTA AATGCCAGAA ACGTGCTGGA TATAGCAGGT ATTTCACTGG AGGCGACTAA AGATATCAAC CTGACAGCGG GGGATAATAT CAATCTAAAT CCAAGGGAGG TCAACACGAT TCCCGAGGCG TTATTTGCCA ACTCGCGACA GACCGAACTC AGCAGTACTA TCAACGCCGG AAATCAGCTA TTAATTTCTA GCGGAAAAGA CTTGCTTGCA CAATCCGCTA GCTTATCCGC CAATGGCAAT GTAGCTCTAC TCGCAGGCAA TAGCTTGAAA TTGCTCGCTA CGGCCTACTC CGCAATTGAC AGTCAGAACG ATAATAATAA AGACGACCGA AATGTTACCG CCAAGGTTCA TGCGGGCAAA AACCTGACGG TAGCTTCCAA TGGAGAGCTG ATCGCAACCG GAACCGATTT CTCTTCCGGC GGCGATATGA CATTAAGTTC CGGTGGGAAA ATGGAATTTA ACGCCGTGGC TAATCATATC TATCGAGAGG GAAGCAACGA ATATAGCGAG TCCGTCACGC AAAAAAATGT CGTTTTAAAC AGCAGTGGAA TACTCACCCT ATTATCCAAC GGCAGCATTC TCTTCCAAGC GACCCAGTTG CTCGCCAAAG GCACGTTAGA TGCCGCAGCC AAAGGCGGTT TCCTTTACGC ACAAGCGGTA GAAGAAAGTA ACCATTACGA GAAAACCACC ACCAAGCGCA AATGGTACGG CAAGAAAACC ACCATTCGAC AAACCAGCCA CAATGTAACG AACAAAGTGA CAGAATTCAC CGCAGGCGGT GATATTAATC TGCTCAGCCG TGATGACAGC ACCTATGAAG CCAGCAAAAT CAACGCGGGC AAGAATGCCA AGCTGACCAG CACACAAGGA AGCATTAACT TCAAGGCGGT CAAAGACACC GCATTCGAGC AGACGATCAC CACCTCAAAA GGGTTCTTCA TCAAGAGCAA TGACAAAGGC TATACCAAAG ACACCTGGTT GCTTCCAAGC ATCTACTCTG GCGGCCAACT GACAATTGAT GCCGCTACTG GCATTACTGC TGATGCAAAA ACCCAGAATG CGCAGTCCCT GCAAAATGCC CTACTAACAC TAGGTAATAA CCCCGGCACA GCCTGGCTGA AAGATTTAAA TGCCCGCCCC GATGTGCAAT GGAACGCGGT ACAAGATGCT TACAGTACCT GGAACCACAC CACACAAAGC CTGAACCCCG TTGTAGGTGC AGTGATTGCC ATTGCCGTTG CAGCGGTAAC CGCAGGCACA GGACTGGCAG CAGCAGCGGG TCAGTTGGCT GCTGGTGCTG TGGGAACGGG AGCCAGCGCG ACAACAATCG CTGTCGTAAA CGGTGCAGCT TATTCAGGCA TGACGGCACT GACCTCGCAG GCAGCAGTCG CGCTGGTGGA TAACAAAGGC AACCTATCCA AAACGTTCCA AGCCATGAGC AGCAGTGACT CGGTCAAATC ACTGGTTACC TCAATGGTGA TCGGCGGTGC ATTAGCAGGA TTCGATGAAG TTATGCAGTT TAGTCAGGCT GCTAACGGTA CAACCGTCAT CGATCCCGCT AAAGCCAAAT TGCCCATGCT CAGCAACGGT GACTGGAGCA AGGTCGCGCA GCGTGTCGCT GGACAGTCAG TGATCAGTTC CAGCATCGGC ACCGCAATTA ACGGCGGTAG CTTCAAAGAT AATTTCACCA CGGCGCTCTT GAGTAATATC GGCAGTCAGA TCAATGCGGA AGGGGCGAAG TTCATTGGGG ATAAGGGAGA AGTCCTCGGC ATAACGGGCA AAACGATTAG CCATGCCGTC GTCGCGGGCG TAGCGGCTGA AATCAGTGGT GGTAACGTCA AAGGCGCAGC AGCTGGTGCA TTGGCGGCAG AGCTAGCGGC AATCAGTTTA GGTAATACTT TCGTCGATCC AGCCTTAAGA GAAATACAGA TAACCTCTAC TGGCAGAATT ATTGGTGCTT TGGCTGGAGC CGCTATTACC GGCAAAGCCA CTGGTGTTAA TAGCGGTGCT AGTGCTGCCG AAAGTGTCCT GCTATATAAC TTCCTTATGC ATGATGAGCC AAAAACACTC GCCGAAAAAT ACGCTGCATG TAAAGGCAGT AGCGATTGTG AGAGTAATGT ACGCAAGGAG ATGAATCAAA CATCAGTAAA GAACCAAGAG ATATTTGAAG GATGCCGAGC AGCAGGTAAT GCCACTTGTG TTAATGACAT GCTTTACGGA ATTTCCGAAG CATCAGGTTA CGATGAGCTC GGCAGGTTGA TTGGCTTCGA TCTCTCTAAT TCTTATAAAG AAATGGGGCA AAATGCTTAT GACCGCGCCA ATATCTGTGG CGGGGATATG AGTTACGGGT GTGGCCTAAA ATTGTGGGCC GACCAACTAC CTGAAGAGCT GCTAGGTGGG ATACTCTCTT GGGGTATTGG GAAAGCTGTA AGCCCCTTAA TTGGTAAATA TTTTACTGAA ACAGGCATAC TATCTGCTAA AGAAACCGCT AATCGACTGG TGAATGGCAA ATGGGTGGAT GCTAATGGGC TTCCACTTCC TGTTCCACCA AGTGTTGGCG CGGCAGGAAG AGTGCCCGTT GTATTACAAA CTGGAGGACA TACGATTACT GCAAGAACAG CTAATGGTTT AAATAAAGAA TTTAACAAAA ACCTGACCAG TAGAGAATGG GGAAGAGCTT TAGAATCATT GAAGGATGAT TACAGTTTAC GACATGACTT TCATGGGCGA ATATTAGACA ATGGAAATTA TATTGATAAA GCGGGTAAAA TAATTGGTAA TATTGAGGAT TACTTACCAT GA
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Protein sequence | MEKFNNRATR GLSYLLIYLT AIQPLHPAFA ALTPDGPRTQ VNNAGAVPVI NIATPNAAGV SHNTYKDFSV GTPGAVLNNS IAAGQSQLAG QLNANANLNG KAAELIINEV TGSTRSDLQG KIEVFGHKAN VLIANPNGIT CDGCGFINTP SATLTTGKPV LDQQGALEAL EVKKGSITIG GKGLDGSATD YVDILSRATE LNGKINAKNL TLTQGSNRVD VKTGTVAPIA GEGAKPLLAV DTKALGGMYA ERIRLVATED GVGANVANLT SSQQGITLDS KGKIQLGNVH AKTDLNLTAQ QVDIAAGNTV KSDRDITLAS TVLNNRGNII AGEDMRLFND SLTNTQATIQ ANNNLWIQKD ATGNKGVKVE NRSGTIKTNT GDLVIRTEQL DNVVEQFSVN KISTPANSTS IDGQFGIMID GTGPDSFVTI YTGVVDDRNL RWIGSFKFTE SPYANTEKNK YTFISSREGN ISSGKNIYIN SSELNNKYST ISALGDIIST GKNANILNHS IGDSNSYVKL ALKFDERDIG IDISPIPAGF NVDEYPLWGD APVPLVRDGN KKTWFEKEYV SSKIHAGGSL VLDFTDTIKI EDNAPENLTE LSEKIYSTPH SYSITGKEII FKSKDIKNQS SVKSTGNLSL LSEGNIKLTG GELNSAGDLS ILASNGIDAN QNKFLGRNIT IISREGDTSL YTDSAAKHFS VDGVRQFSTL NATENLSIQS GKDILLNGIE IGKAKNISLI SGNNITVKND EAILDPQKIG STFTDPEKQK KFDYAFNHLG NITSTDSITL NARNVLDIAG ISLEATKDIN LTAGDNINLN PREVNTIPEA LFANSRQTEL SSTINAGNQL LISSGKDLLA QSASLSANGN VALLAGNSLK LLATAYSAID SQNDNNKDDR NVTAKVHAGK NLTVASNGEL IATGTDFSSG GDMTLSSGGK MEFNAVANHI YREGSNEYSE SVTQKNVVLN SSGILTLLSN GSILFQATQL LAKGTLDAAA KGGFLYAQAV EESNHYEKTT TKRKWYGKKT TIRQTSHNVT NKVTEFTAGG DINLLSRDDS TYEASKINAG KNAKLTSTQG SINFKAVKDT AFEQTITTSK GFFIKSNDKG YTKDTWLLPS IYSGGQLTID AATGITADAK TQNAQSLQNA LLTLGNNPGT AWLKDLNARP DVQWNAVQDA YSTWNHTTQS LNPVVGAVIA IAVAAVTAGT GLAAAAGQLA AGAVGTGASA TTIAVVNGAA YSGMTALTSQ AAVALVDNKG NLSKTFQAMS SSDSVKSLVT SMVIGGALAG FDEVMQFSQA ANGTTVIDPA KAKLPMLSNG DWSKVAQRVA GQSVISSSIG TAINGGSFKD NFTTALLSNI GSQINAEGAK FIGDKGEVLG ITGKTISHAV VAGVAAEISG GNVKGAAAGA LAAELAAISL GNTFVDPALR EIQITSTGRI IGALAGAAIT GKATGVNSGA SAAESVLLYN FLMHDEPKTL AEKYAACKGS SDCESNVRKE MNQTSVKNQE IFEGCRAAGN ATCVNDMLYG ISEASGYDEL GRLIGFDLSN SYKEMGQNAY DRANICGGDM SYGCGLKLWA DQLPEELLGG ILSWGIGKAV SPLIGKYFTE TGILSAKETA NRLVNGKWVD ANGLPLPVPP SVGAAGRVPV VLQTGGHTIT ARTANGLNKE FNKNLTSREW GRALESLKDD YSLRHDFHGR ILDNGNYIDK AGKIIGNIED YLP
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