| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0054 |
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| Symbol | |
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| ID | 8130954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 63269 |
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| End bp | 63787 |
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| Gene Length | 519 bp |
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| Protein Length | 172 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644863324 |
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| Product | type VI secretion system effector, Hcp1 family |
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| Protein accession | YP_003015652 |
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| Protein GI | 253686462 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAACTC CATGCTATAT CAGCATCGAA GGTAAAACGC AGGGCAACAT CACCGCTGGT
GCTTTCACGT CTGATTCTGT CGGCAACATC TATGTGGAAG GCCACGAAGA CGAAATGCTG
GTACAAGAAT TCAAACACAT CGTCACCGTA CCAACCGACC CGCAGTCTGG TCAGCCATCC
GGCCAGCGCG TACACAAGCC GTTCAAATTC ACCGTTGCGC TGAACAAAGC GGTTCCGCTG
ATGTACAACG CCCTGGCGTC CGGTGAAATG CTGCCGACAG TGACCCTGAA ATGGTACCGC
ACATCGGTTG AAGGCAAGCA GGAGCACTTC TTCTCTACCG TGCTGACCGA TTCCACCATC
GTTGACATCA ACTGCCAGAT GCCACACTGC CAGGACCCGT CAAAACTGGA TTACACCCAA
CTGATTGAAG TGTCACTGGC CTACCGCAAA ATTGACTGGG AACACACCGT TGCCGGTACC
TCCGGTTCTG ATGACTGGCG TGCGCCGATC GAAGCGTAA
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| Protein sequence | MPTPCYISIE GKTQGNITAG AFTSDSVGNI YVEGHEDEML VQEFKHIVTV PTDPQSGQPS
GQRVHKPFKF TVALNKAVPL MYNALASGEM LPTVTLKWYR TSVEGKQEHF FSTVLTDSTI
VDINCQMPHC QDPSKLDYTQ LIEVSLAYRK IDWEHTVAGT SGSDDWRAPI EA
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