Gene PC1_0047 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0047 
SymboldppD 
ID8130947 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp53615 
End bp54595 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content58% 
IMG OID644863318 
Productdipeptide transporter ATP-binding subunit 
Protein accessionYP_003015646 
Protein GI253686456 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGTTGC TCAATGTAGA TAAACTGTCG GTTCACTTTG GTGACGAGGA TCTGCCGTTT 
CGGGCGGTCG ATCGCATCAG TTATCAGGTG GAAGAAGGGC AGGTGGTCGG TATCGTCGGG 
GAATCCGGCT CCGGTAAATC TGTCAGCTCG CTGGCGATCA TGGGGCTGAT TGACTATCCC 
GGCAAAGTGA TGGCCGACAA GCTGGAATTT AACCAGCGCG ATTTAAAGAA AATTTCCGAG 
AAAGAACGGC GTAATCTGGT GGGCTCTGAG GTCGCGATGA TCTTCCAGGA CCCGATGACC 
AGCCTGAACC CGTGCTACAC CGTGGGCTAC CAGATTATGG AAGCCATCAA GGTGCATCAG 
GGTGGTAACC GCAAAACCCG TCGTCAGCGG GCGATTGACC TGCTGACGCT GGTTGGGATT 
CCCGATCCGG CTTCGCGTCT CGATGTGTAC CCGCATCAGC TTTCCGGCGG GATGAGCCAG 
CGCGTGATGA TTGCGATGGC GATTGCCTGT CGGCCGAAGC TGCTGATTGC CGATGAGCCA 
ACGACGGCGC TGGACGTGAC CATTCAGGCG CAGATTATTG AACTGCTGCT CGAACTGCAG 
CAGCGCGAGA ACATGGCGCT GATCCTGATT ACGCACGATT TGGCGCTGGT GGCCGAAGCG 
GCACACCACA TCATCGTGAT GTATGCCGGT CAGGTGGTGG AATCAGGCAA AGCGGCGGAT 
ATTTTCAGCG CGCCGCGTCA TCCGTATACC CAGGCATTAC TGCGTGCGCT GCCGGAGTTC 
GCGGCGGACA AATCCCGACT GGCATCGCTG CCGGGCGTGG TGCCGGGCAA ATACGATCGC 
CCGAACGGCT GTCTGTTAAA CCCACGCTGC CCCTATGCGC AGGACCGTTG CCGTCAGGAA 
GAACCTGCAC TGCGCGATAT TCCTGGTCGT CAGGTGAAAT GTCATACACC GCTGGATGAT 
GCGGGGAGAC CGACCCTATG A
 
Protein sequence
MALLNVDKLS VHFGDEDLPF RAVDRISYQV EEGQVVGIVG ESGSGKSVSS LAIMGLIDYP 
GKVMADKLEF NQRDLKKISE KERRNLVGSE VAMIFQDPMT SLNPCYTVGY QIMEAIKVHQ 
GGNRKTRRQR AIDLLTLVGI PDPASRLDVY PHQLSGGMSQ RVMIAMAIAC RPKLLIADEP 
TTALDVTIQA QIIELLLELQ QRENMALILI THDLALVAEA AHHIIVMYAG QVVESGKAAD 
IFSAPRHPYT QALLRALPEF AADKSRLASL PGVVPGKYDR PNGCLLNPRC PYAQDRCRQE 
EPALRDIPGR QVKCHTPLDD AGRPTL