Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0045 |
Symbol | |
ID | 8130945 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 51666 |
End bp | 52685 |
Gene Length | 1020 bp |
Protein Length | 339 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644863316 |
Product | dipeptide transporter permease DppB |
Protein accession | YP_003015644 |
Protein GI | 253686454 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTGCAGT TCATACTCCG GCGTTTGGGG CTTGTTATCC CAACGTTTAT TGGTATCACC CTGTTGACCT TCGCATTCGT GCACATGATT CCGGGCGATC CGGTGATGAT CATGGCGGGG GAACGCGGTA TTTCCGCCGA GCGCCATGCG CAATTGCTAG CTGAAATGGG GCTGGACAAG CCGCTTTGGC AGCAATACAT CCACTATATT GGTGGTGTGT TGCAGGGCGA TCTGGGGATT TCTCTCAAGA GCCGCATCCC CGTGTGGGAA GAATTTGTGC CTCGCTTTAA GGCGACGCTG GAACTGGGTA TCTGCGCGAT GTTGTTTGCT ATCGCGGTTG GGATCCCGGT TGGTGTGCTG GCTGCGGTTA AACGCGGCTC CATCTTCGAT CATACGTCTG TTGGCCTGGC GCTGACGGGT TACTCCATGC CTATCTTCTG GTGGGGCATG ATGCTGATCA TGCTGGTTTC CGTCCAGCTC AACCTGACGC CCGTTTCGGG GCGCATTAGC GACACGATTT TCCTCGATGA CAGCATGCCG CTGACTGGCT TTATGCTGAT CGATACCCTG TTCTGGGGTG AAAAAGGCGA CTTTATCGAC GCGGTTGAAC ACATGATTCT GCCTGCCATC GTGCTGGGTA CCATTCCACT GGCGGTGATT GTGCGTATGA CGCGCTCCGC GATGCTGGAA GTGCTAGGCG AGGATTACAT TCGTACCGCC CGCGCCAAAG GGTTGAGTCG CCTGCGTGTG ATTGTGGTGC ACGCGTTACG TAATGCGATG TTGCCGGTCG TGACGGTGAT TGGCCTGCAG GTCGGCACCA TGTTGGCTGG AGCGATCCTG ACGGAAACCA TTTTCTCCTG GCCGGGGCTG GGACGGTGGT TGATCGATGC GTTGCAGCGT CGTGATTATC CGGTAGTTCA GGGCGGCGTG TTGCTGGTAG CAACCATGAT CATTCTGGTT AACCTGCTGG TGGATGTGCT CTACGGTGTG GTTAACCCAC GCATCCGTCA CAAGAAATAA
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Protein sequence | MLQFILRRLG LVIPTFIGIT LLTFAFVHMI PGDPVMIMAG ERGISAERHA QLLAEMGLDK PLWQQYIHYI GGVLQGDLGI SLKSRIPVWE EFVPRFKATL ELGICAMLFA IAVGIPVGVL AAVKRGSIFD HTSVGLALTG YSMPIFWWGM MLIMLVSVQL NLTPVSGRIS DTIFLDDSMP LTGFMLIDTL FWGEKGDFID AVEHMILPAI VLGTIPLAVI VRMTRSAMLE VLGEDYIRTA RAKGLSRLRV IVVHALRNAM LPVVTVIGLQ VGTMLAGAIL TETIFSWPGL GRWLIDALQR RDYPVVQGGV LLVATMIILV NLLVDVLYGV VNPRIRHKK
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