| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0029 |
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| Symbol | |
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| ID | 8130929 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 32541 |
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| End bp | 33863 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644863300 |
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| Product | PTS system, lactose/cellobiose family IIC subunit |
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| Protein accession | YP_003015628 |
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| Protein GI | 253686438 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC |
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| TIGRFAM ID | [TIGR00359] phosphotransferase system, cellobiose specific, IIC component
[TIGR00410] PTS system, lactose/cellobiose family IIC component |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGGCC TCTATCAGTC GATGGTTAAT ATCATCGAGC AAAAAATTAC CCCGCTGGCG
GGTGTGGTGG GACAGCAGCG CCACATCATC GCGATTCGTG ATGGTTTTAT CGCCGCGCTG
CCTTTTATGA TCATCGGTTC GTTTATGCTG GTGTTCATCT TCCCGCCGTT CGCGCCGGAT
ACCACGCTGG GGTTCGCCCG CGCGTGGCTC GATTTCTCCG TTGCCTACCG TGAACAGCTG
ATGCTGCCGT ACTACCTCAG TATGGGAGTC ATGACCTTCT TTATCTCGGT GGGGATAGGA
GCCAGCCTGG GCAAGCACTA CAAGCTGGAC CCCATCATGA CCGGCCTGCT GGCGCTGATG
GCATTCTTGC TGGTGGCCGC GCCTTATCAC GACAAGCAAA TTTCTACCCA GTACTTCTCC
GGCGAGGGGA TTTTTACCGC GATCCTGACG TCAATTTATG CGGGTGAGGT ATATGCCTGG
CTGAAGAAAC GCAATATCAC GATTCGTCTG CCGAAAGAGG TGCCGACCGG CGTGGCGCGT
TCGTTTGAAA TCCTCATCCC CGTGCTGGTC ATCGTCGCGA CGCTGCACCC GTTTAACCTG
TTCATCCAGT CCGCGACCGG CATGATTATC CCCGAAGCGA TTATGCATCT GCTGGCACCG
CTGATTTCGG CGTCGGATTC ACTGCCTGCG ATTCTGATTT CGGTGTTTAT CTGCCAGATT
CTGTGGTTTG CCGGGATTCA CGGCGCGCTG ATCGTCACCG GGATTATGAA CCCGTTCTGG
ATGACCAACC TGGCGTTGAA CCAGGCCGCG CTCTCGGCCG GTGCACCGTT GCCGCATATT
TATTTGCAGG GCTTCTGGGA TCACTACCTG CTGATCGGCG GGGTCGGTTC CACACTGCCG
CTGGCATTTT TGCTGTTGCG TAGCCGCGCC GTTCATCTGC GAACGATTGG CCGCATGGGC
GTGGTGCCGA GTTTTTTCAA CATCAACGAA CCAATTCTGT TTGGTGCACC GATCATCATG
AACCCGCTGC TGTTCCTGCC GTTTATTTTC GTGCCGATGG TTAATGCCGT CATTGCCTAT
ACGGCGACGA AGCTCGGCTG GATCGCGCAG GTGGTTTCCC TGACGCCGTG GACGACGCCT
GCACCGATTG GCGCATCATG GGCGGCGAAC TGGGCGTTCA GCCCGGTGAT CATGTGTCTG
CTCTGCATGG TGATGTCGGC TGCGATGTAT TACCCGTTCC TGAAAGTTTA TGAGCGCACG
CTGCTTAAAC AGGAACAGGA GAAACAACAG CAGGCCGCAG GCGAAGCCAG CGCCAGCGCA
TAA
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| Protein sequence | MSGLYQSMVN IIEQKITPLA GVVGQQRHII AIRDGFIAAL PFMIIGSFML VFIFPPFAPD
TTLGFARAWL DFSVAYREQL MLPYYLSMGV MTFFISVGIG ASLGKHYKLD PIMTGLLALM
AFLLVAAPYH DKQISTQYFS GEGIFTAILT SIYAGEVYAW LKKRNITIRL PKEVPTGVAR
SFEILIPVLV IVATLHPFNL FIQSATGMII PEAIMHLLAP LISASDSLPA ILISVFICQI
LWFAGIHGAL IVTGIMNPFW MTNLALNQAA LSAGAPLPHI YLQGFWDHYL LIGGVGSTLP
LAFLLLRSRA VHLRTIGRMG VVPSFFNINE PILFGAPIIM NPLLFLPFIF VPMVNAVIAY
TATKLGWIAQ VVSLTPWTTP APIGASWAAN WAFSPVIMCL LCMVMSAAMY YPFLKVYERT
LLKQEQEKQQ QAAGEASASA
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