| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0027 |
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| Symbol | |
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| ID | 8130927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 30438 |
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| End bp | 31883 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644863298 |
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| Product | major facilitator superfamily MFS_1 |
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| Protein accession | YP_003015626 |
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| Protein GI | 253686436 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCTTTAA CAGATTCATC CCAGGACAAA GCGCCTCGGC AGGAACACTC TGACTCTGGG
CGGATTTCAG GGCTGGCGCT GCTGGTTGCC AGCGCTTTTT TTATGGAGTT TCTTGATGGA
ACGGTGATTG CCACGGCTCT GCCAGATATG GCAAAGGCGT TTGGCGTCAC GGCGATAGAC
CTTAATATTG GTATCAGCGC TTATTTATTA ACTCTGGCAG TGTTGATCCC GGCCAATGGG
TGGGTTGCGG AGCGCTTTGG TGCGCGAAAT GTATTTACCC TGGCGCTGTG CATTTTCACG
CTCTCATCCC TATTATGCGG CCTGAGTCAT AACGTCACTG AGTTTGTTCT GATGCGTATC
CTCCAGGGGG TCGGTGGTGC CATGATGGTT CCGGTAGGAC GTCTGGTCGT TCTGCGTACC
ACCCCGAAGG ATCAGTTGAT TAAGGCGATC GCAACGCTAA CCTGGCCCGC GCTGGTGGCA
CCGATCATTG GGCCACCGCT GGGCGGATTC ATTACCACCT ACGCCAGCTG GCACTGGATT
TTCTTTCTCA ATGTCCCCCT TGGGCTGATC GCCATCGTGC TGTCATTGCG GATGATGCCT
AACCAGTCAG CGAACGAGAG TAAGCCGTTT GATTTCCCTG GGTTTATCGC TACAGGCGTA
ACAATGTTGT GTCTGGTCGT AGGGCTGGAA ATGCTCAGCC AGCAAAATGT CAGCCTGATC
GGAGCCGCGG TCACTATTGC GATTGGCCTT GCCACGTTGG TGTGGAGTGT CCGTCATCTT
TTGACCTGTA AAACGCCGCT GATTGGCCTA TCTTCGCTTT CGGTGCCTTC ATTTCGCATC
AGCATGCGTG GGGGATTTAT TCTTCGTGCG ACGATCAGCT CCGCACCCTT TATGTTGCCA
CTGATGTTTC AGGTTGGCTT CGGGATGAAC GCGTTTGAAG CTGGCTCGAT GGTGCTGGCC
GTGTTTGCAG GCAATTTGGC GATGAAGCCT GCGACCACGC CGCTAATTCG CTACTTTGGT
TTCCGCAAGC TACTAATCAG TAATGGTATT GCCTGCGTAT TGACGCTGCT GCTGTGCGCG
CTGCTCACGC CAGACTCACC GCATCTGATA ACGCTGACGC TGCTGTTCCT CGGCGGGCTG
AGCCGTTCCA TGCAGTTTAC CAGCATCAGT TCGCTGGCGT TCGCTGAAGT TCCGTCGCAA
GAGATGAGCT CAGCCAATAC GCTGTTCAGT ACCTCACTCC AACTCGCCAG CGGCTTGGGG
GTAACAATGG GGGCGCTAAG CATACGCTTG GGCAACATCC TCAGCGATGA ACTGGGTTAT
ACAGCCGTGC CTGGCATGGG GTTTCGCCTG GGATTTGTGG TCATTGCGAT TATCACCGCC
TTCGGAGTGT ATGATATGAC GCGGCTCGCA CCAAATGCGG GTATCAACGT CTCGCAGAAA
AAATAG
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| Protein sequence | MALTDSSQDK APRQEHSDSG RISGLALLVA SAFFMEFLDG TVIATALPDM AKAFGVTAID
LNIGISAYLL TLAVLIPANG WVAERFGARN VFTLALCIFT LSSLLCGLSH NVTEFVLMRI
LQGVGGAMMV PVGRLVVLRT TPKDQLIKAI ATLTWPALVA PIIGPPLGGF ITTYASWHWI
FFLNVPLGLI AIVLSLRMMP NQSANESKPF DFPGFIATGV TMLCLVVGLE MLSQQNVSLI
GAAVTIAIGL ATLVWSVRHL LTCKTPLIGL SSLSVPSFRI SMRGGFILRA TISSAPFMLP
LMFQVGFGMN AFEAGSMVLA VFAGNLAMKP ATTPLIRYFG FRKLLISNGI ACVLTLLLCA
LLTPDSPHLI TLTLLFLGGL SRSMQFTSIS SLAFAEVPSQ EMSSANTLFS TSLQLASGLG
VTMGALSIRL GNILSDELGY TAVPGMGFRL GFVVIAIITA FGVYDMTRLA PNAGINVSQK
K
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