| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0026 |
|---|
| Symbol | |
|---|
| ID | 8130926 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 28966 |
|---|
| End bp | 29988 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644863297 |
|---|
| Product | alkanesulfonate transporter substrate-binding subunit |
|---|
| Protein accession | YP_003015625 |
|---|
| Protein GI | 253686435 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.778935 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCATTGA TGATGAAAAA ATCGGTCACG GAAATACGTG AGAAACGCAC GCCATTATGG
AAAAACGTAG CGACGCAGCT ACGCCGGATC CCTACGCTTC TGGTTGCCAG CGCAGTGCTG
TTCATGTCCA CGGCTTATGC ACAAGACAGC GTACCCACGC AGTTACGCAT CGGTTATCAG
AAAGGCTCGA TCAGTCTGGT GCTGGCAAAA TCACACCTGT TGCTGGAAAA GCAGTTCCCA
AACACCAAAA TCAGCTGGAT TGAGTTCCCC GCCGGTCCGC AGATGCTGGA AGCGCTCAAC
GTTGGCAGCA TCGATCTGGG TGGCACTGGC GATATCCCGC CGATTTTTGC GCAGGCTGCT
GGCGCAGACC TGCTGTATGT CGGCGTGGAG CCGCCGAAGC CTCAAGCCGA AGTGATTCTG
GTGCGGGAAG ACAGCCCAGT GAAAACCGTT GCTGATTTAA AAGGTCGCAA AGTCGCCTTC
CAGAAAGGCT CCAGCGCACA TAATACGCTG CTGCGGGCGC TGCAACGTGA CGGACTGAAA
TTCACCGATA TCAAACCGAC CTACCTGACT CCCGCTGATG CGCGCGCGGC CTTCCAGCAA
GGCAACGTCG ATGCATGGGC AATCTGGGAT CCCTACTATT CCGCCGCGCT GCTGGAAGGC
GGCGTTCGCG TGCTGGTCGA TAGCAGCGGG CTGGAGAAAA CCGGTTCCTT CTATCTGGCT
GGTCGTCCTT ATGCCGAGGC GCACGGCACC TTTATTCGCC AGGTACTGGA CGAGCTGACC
AAGGCCGATG CCTTAACGAT CAGCGACCGG GCGCAAAGCG TCACTCTGTT GGCAAACGCG
GTAGGACTGC CGGAAAAAGT GATTGAAACG GCGCTCGACC ATCGCCCGCC GACCACCATA
GAACCGCTGG ATGCCGCCAC GATCAAGGCA CAGCAATCCA CGGCCGACCT GTTTTATGAA
AACCGTCTGG TACCGGTGAA GGTCAATATC GCAGAGCGCG TCTGGCGTCC CAAGGCGAAC
TAA
|
|---|
| Protein sequence | MSLMMKKSVT EIREKRTPLW KNVATQLRRI PTLLVASAVL FMSTAYAQDS VPTQLRIGYQ
KGSISLVLAK SHLLLEKQFP NTKISWIEFP AGPQMLEALN VGSIDLGGTG DIPPIFAQAA
GADLLYVGVE PPKPQAEVIL VREDSPVKTV ADLKGRKVAF QKGSSAHNTL LRALQRDGLK
FTDIKPTYLT PADARAAFQQ GNVDAWAIWD PYYSAALLEG GVRVLVDSSG LEKTGSFYLA
GRPYAEAHGT FIRQVLDELT KADALTISDR AQSVTLLANA VGLPEKVIET ALDHRPPTTI
EPLDAATIKA QQSTADLFYE NRLVPVKVNI AERVWRPKAN
|
|---|
| |