Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0015 |
Symbol | |
ID | 8130915 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 17358 |
End bp | 18908 |
Gene Length | 1551 bp |
Protein Length | 516 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644863286 |
Product | extracellular solute-binding protein family 5 |
Protein accession | YP_003015614 |
Protein GI | 253686424 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAAAT CGACTCTGGC GTTATTGTTT ACCGTTTTAT TTTCATCTTC ACCTTTGGTT TATAGCGCGG ACCTGAATAT CGGTTTGGCT TCCTCCACCA CATCAATGGA TCCGCAGTTT TATGTGAGTG GAGCGAATAG CGCAATGGCG CGCAATATTT TTGACGGTTT GGTTGTACAG GATGAAAAAC AGCAGATTGC ACCTGCCCTG GCAACCAGTT GGAAAGTGAT TGACGACAAG ACGTGGGAAT TTGTATTGCG TCCTGGCGTT AAGTTTCACG ACGGCAGTGA TTTTACGGCT AAAGATGTGA TTGCCAGCAT TAAGCGTGTT GCGCTGGCAT CAAAAAACAG CCCTAGCTCT TACGCACCTT ACGTCAGCGA CATTGCTGAA GTAATAGAAG TTAATCCACT AACGGTGCGG ATTAAGACAA AAGAGGCTTC GCCACTGCTG CTGAATAATT TAAGTCGGAT TTCGATTTTA CCGGCCCGAC TTGAGAACGT CCCGACGGAA ACGTTGAATT CAGGAAAAGA TGTGATTGGT ACAGGGCCAT TCAAATTTGT TTCCTGGGTG CCGGACGACC GGGTAGTCCT TAGTCGTAAT GACGATTACT GGGGAGGAAA AGCAGAGTGG GACAACGTTA CTGTCCGTGT ATTTAAAAAC AGTAGTGCAC GTGTAGCAGC AGTATTATCC GGTGATGTGG ACATGATCGA AAACGTTCCA ACAGCCGACA GCAGTAATAT TGAAAAAAAT CAGCAGTTAA AAACGATTTC AACACCAGGG AATCGTGTTA TTTACCTTCA CATGGACCAG CAGCGAGAGG AATCACCGTT CGCCAAAGGT CCTGATGGTA AAAACCCATT ACTAAAAAAA GAAGTACGCC AGGCGATGTC TTTAGCTATT AATCGTCAGG CAATCGTCGA CCGTGTGATG GAGGGGCAGG CTGTTGTTGC CTCTCAGCTT GTACCGAAGG GGTACCCAGG CTATTCCGCT TCCATTCCTG CGCCGGTTTA TAATCCGGAG AAAGCCAAAC AGGAACTGGC GGCGGCGGGT TACCCCGACG GCTTCACGCT GACCTTCCAC GCGTCGAACG ATCGTTATCC TAATGATTCT AAAATTGCTC AGGCCATTGG CCAAATGTTC ACACGCGCCG GCATCAAAAC CGAAGTCGTT ACGATGCCCG GCAGTGTGTA CTTCTCACGC GCGTCTCGTC TCGAATTCAG TTTGATTATG GGCGGGGCCG CGATTGAAAC CGGGGAAGCT TCTGGCGTAT TGGGGCCATT GTTAGAAACC TTTGGCCCTA ATGCAGGACA GGGTAATCGT GGTCGCTATT CCAACCCTGC CTTTGATAAA GCGCTAAGCG AAGCGCGTGT CACATTGGAT GAAACTAAAC GTGATGCGCT GCTGGCTGAA GCGATGAACA TTGGCATGAA CGATCTGGGT GTCATTCCGG TGATGTTCCT GTCCAACACC TGGGCGATGA AAAAGCAGTA TACCTATGTG GGTCGTTCCG ATGCCTACAC GCTGCCGTAC TTCGTCCGTT CCGCAAAATA G
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Protein sequence | MKKSTLALLF TVLFSSSPLV YSADLNIGLA SSTTSMDPQF YVSGANSAMA RNIFDGLVVQ DEKQQIAPAL ATSWKVIDDK TWEFVLRPGV KFHDGSDFTA KDVIASIKRV ALASKNSPSS YAPYVSDIAE VIEVNPLTVR IKTKEASPLL LNNLSRISIL PARLENVPTE TLNSGKDVIG TGPFKFVSWV PDDRVVLSRN DDYWGGKAEW DNVTVRVFKN SSARVAAVLS GDVDMIENVP TADSSNIEKN QQLKTISTPG NRVIYLHMDQ QREESPFAKG PDGKNPLLKK EVRQAMSLAI NRQAIVDRVM EGQAVVASQL VPKGYPGYSA SIPAPVYNPE KAKQELAAAG YPDGFTLTFH ASNDRYPNDS KIAQAIGQMF TRAGIKTEVV TMPGSVYFSR ASRLEFSLIM GGAAIETGEA SGVLGPLLET FGPNAGQGNR GRYSNPAFDK ALSEARVTLD ETKRDALLAE AMNIGMNDLG VIPVMFLSNT WAMKKQYTYV GRSDAYTLPY FVRSAK
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