Gene PC1_0003 details

Gene Information

• Locus tag: PC1_0003
• Symbol: recF
• ID: 8130903
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 2624
• End bp: 3709
• Gene Length: 1086 bp
• Protein Length: 361 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 644863274
• Product: recombination protein F
• Protein accession: YP_003015602
• Protein GI: 253686412
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1195] Recombinational DNA repair ATPase (RecF pathway)
• TIGRFAM ID: [TIGR00611] recF protein

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.279219
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTCTCA CTCGTCTTCT CATCAAAGAT TTCCGCAATA TCGAGGCGGC CGATCTGGCG 
CTGGTTCCCG GCTTTAATTT TTTAGTGGGT GCCAACGGCA GCGGTAAAAC CAGCGTGCTG 
GAAGCGATTT ATACGCTAGG GCACGGGCGG GCGTTTCGTA GCATTCAGGC GGGGCGCGTC 
ATTCGGCACG ATCAGCCGGA ATTTGTGCTG CACGGTCGTA TTGACGGTAC GGAAACAGAG 
CGTTCCGTTG GGCTAAGCAA AAACCGTCAG GGCGATAGCA AGGTGCGGAT CGACGGCAGC 
GATGGGCACA AAGTCGCTGA ACTGGCGCAA CTGCTGCCGA TACAGCTGAT CACCCCGGAA 
GGGTTTACCC TGCTCAACGG CGGTCCGAAA TTTCGTCGCG CCTTTCTCGA CTGGGGTTGT 
TTCCATAATG AACCTGGCTT TTTTGCAGCC TGGAGCAATA TGAAACGCCT GCTGCGCCAG 
CGTAATGCTG CGCTGCGTCA GGTGAGTCAC TATGGGCAAC TGAGAGCCTG GGATCAGGAA 
CTGGTGCCGC TGGCGGAACG TATCAGCGAA TGGCGTGCGC AATACAGTGC GGCGATTGCC 
AATGATATCG CCACGACCTG TACGCAATTT CTGCCTGAAT TTTCGCTCAG TTTCTCTTTC 
CAGCGCGGCT GGGATAAAGA AAGTGAGTAT GCCGAACTGC TGGAACGGCA GTTCGAACGC 
GACCGTATGT TAGGTTATAC GGCGCTGGGG CCGCATAAAG CCGACTTCCG CATCCGCGCC 
AGCGGCGTGG CAGTCGAGGA TATGCTGTCC CGTGGCCAGC TCAAGCTGCT GATGTGCGCG 
CTGAGGCTGG CTCAGGGTGA ATTTCTCACC CGTCAGAACG GACTGCGCTG TCTGTATCTG 
ATCGATGATT TTGCTTCCGA ACTGGATAGT ACCCGCCGCC GTTTGTTAGC CGAACGGTTG 
AAAGCCACCC ATGCACAGGT TTTTGTCAGC GCGGTCAGCG CCGAACAGAT AGAGGACATG 
GTTGGTGAAA AGGGCAAGAT GTTCCGCGTA GAACAGGGTA AAATAACGGT TCAATCACAG 
GACTAA 

 

Protein sequence

MALTRLLIKD FRNIEAADLA LVPGFNFLVG ANGSGKTSVL EAIYTLGHGR AFRSIQAGRV 
IRHDQPEFVL HGRIDGTETE RSVGLSKNRQ GDSKVRIDGS DGHKVAELAQ LLPIQLITPE 
GFTLLNGGPK FRRAFLDWGC FHNEPGFFAA WSNMKRLLRQ RNAALRQVSH YGQLRAWDQE 
LVPLAERISE WRAQYSAAIA NDIATTCTQF LPEFSLSFSF QRGWDKESEY AELLERQFER 
DRMLGYTALG PHKADFRIRA SGVAVEDMLS RGQLKLLMCA LRLAQGEFLT RQNGLRCLYL 
IDDFASELDS TRRRLLAERL KATHAQVFVS AVSAEQIEDM VGEKGKMFRV EQGKITVQSQ 
D