Gene PC1_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0002 
Symbol 
ID8130902 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp1474 
End bp2574 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content56% 
IMG OID644863273 
ProductDNA polymerase III subunit beta 
Protein accessionYP_003015601 
Protein GI253686411 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.00514307 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTTA TTGTTGAACG CGAACGTCTG TTAAAGCCAT TACAACAGGT CAGCAGCCCG 
CTGGGCGGCC GACCGACTTT ACCGATTCTG GGCAACCTGC TGATTCAGGT GACGGAAGAT 
GCACTGTCGC TGACCGGTAC CGATCTGGAA ATGGAGATGG TGGCGAAAGT GGCGCTGACG 
CAGCCGCATG AGCCGGGTGC CACGACTGTC CCTGCCCGCA AGCTGTTCGA TATTTGCCGG 
GGGCTGCCGG AAGGCGCGGA AATCACCATT ATGCTGGATG GCGATCGCAT GCTGGTGCGC 
TCTGGCCGCA GCCGTTTCTC GCTGTCTACG CTACCTGCGG CGGATTTCCC TAATCTGGAC 
GACTGGCAGA GCGACGTTGA ATTCTCGTTG CCGCAGGCGA CGATGAAGCG TTTGATCGAA 
GCGACGCAGT TTTCGATGGC GCATCAGGAC GTACGCTACT ACCTCAACGG TATGCTGTTT 
GAAACCGAAG GTGAAGAGCT ACGCACGGTC GCGACAGATG GTCACCGTCT GGCGGTCTGT 
TCCATGCCGG TTGGTCAATC TCTACCATCA CATTCGGTGA TCGTACCGCG TAAAGGCGTG 
ATGGAACTGG TGCGTCTGCT GGATGGCGGT GATACGCCGT TGCAGCTGCA GATCGGCAGC 
AACAATATTC GCGCGCATGT CGGCGACTTT ATTTTCACGT CGAAGCTGGT CGATGGGCGT 
TTCCCTGATT ATCGCCGCGT ATTGCCGAAA AACCCGGATA AAACGCTGGA AGCCAGTTGC 
GATCTGCTCA AGCAGGCCTT CTCCCGTGCG GCGATTTTAT CGAATGAAAA ATTCCGCGGT 
GTGCGTCTGC ACCTGATTCA GAATCAGCTC AAAATTACTG CCAATAACCC GGAGCAGGAA 
GAAGCGGAAG AGATTCTGGA TGTGCAGTAC GACGGCACCG AGATGGAAAT CGGCTTTAAC 
GTCAGTTACG TACTGGATGT GCTGAACGCG CTGAAGTGCG AAGGTGTACG TTTGTTGCTG 
ACCGATTCCG TTTCCAGCGT GCAGATCGAA GATAGCGCCA GCCGGGCGGC GGCCTATGTC 
GTTATGCCAA TGCGGTTGTA G
 
Protein sequence
MKFIVERERL LKPLQQVSSP LGGRPTLPIL GNLLIQVTED ALSLTGTDLE MEMVAKVALT 
QPHEPGATTV PARKLFDICR GLPEGAEITI MLDGDRMLVR SGRSRFSLST LPAADFPNLD 
DWQSDVEFSL PQATMKRLIE ATQFSMAHQD VRYYLNGMLF ETEGEELRTV ATDGHRLAVC 
SMPVGQSLPS HSVIVPRKGV MELVRLLDGG DTPLQLQIGS NNIRAHVGDF IFTSKLVDGR 
FPDYRRVLPK NPDKTLEASC DLLKQAFSRA AILSNEKFRG VRLHLIQNQL KITANNPEQE 
EAEEILDVQY DGTEMEIGFN VSYVLDVLNA LKCEGVRLLL TDSVSSVQIE DSASRAAAYV 
VMPMRL