Gene PC1_0001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0001 
SymboldnaA 
ID8135299 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp72 
End bp1469 
Gene Length1398 bp 
Protein Length465 aa 
Translation table11 
GC content52% 
IMG OID644863272 
Productchromosomal replication initiation protein 
Protein accessionYP_003015600 
Protein GI253686410 
COG category[L] Replication, recombination and repair 
COG ID[COG0593] ATPase involved in DNA replication initiation 
TIGRFAM ID[TIGR00362] chromosomal replication initiator protein DnaA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00156244 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCACTTT CGCTTTGGCA GCAGTGTCTT GCCCGTTTGC ATGATGAGTT ACCTGCCACA 
GAATTCAGTA TGTGGATACG CCCGTTGCAG GCGGAGCTGA GTGATAACAC TCTGGCGCTC
TACGCCCCCA ATCGTTTTGT GCTGGATTGG GTTCGTGATA AATACTTAAA TAATATCAAT
GTCCTGCTGA ATGATTTTTG TGGGATGGAT GCCCCTTTAC TGCGTTTTGA GGTGGGTAGT
AAACCGCTGG TTCAGGCCAT CAGCCAGCCC GCGCAACCGC ATCATAAGCA GGTCAGTGCT
GCGCCTCAGC AGCAGGTACG CTCAGCGCCA GTACGTCCAA GCTGGGATAA CTCACCCGCG
CAGGCGGAGC ATACCTACCG TTCCAATGTG AACCCCAAAC ATACGTTTGA TAACTTCGTT
GAGGGTAAAT CGAACCAGTT AGCACGTGCG GCGGCGCGTC AGGTGGCTGA TAATCCGGGT
GGCGCCTATA ACCCGTTGTT TCTTTATGGC GGTACCGGCC TGGGTAAAAC GCACCTGTTG
CACGCAGTGG GGAATGGCAT CATTGCCCGT AAACCCAACG CGAAGGTGGT CTACATGCAC
TCCGAGCGTT TCGTGCAGGA TATGGTGAAA GCGTTGCAGA ACAATGCGAT TGAAGAATTC
AAACGCTACT ACCGTTCTGT TGATGCGCTG CTGATCGATG ATATTCAATT CTTTGCTAAT
AAAGAGCGTT CGCAGGAAGA GTTCTTCCAT ACCTTCAACG CGCTGCTGGA AGGCAACCAG
CAAATCATTC TGACGTCTGA CCGCTACCCG AAAGAGATTA ACGGCGTGGA AGATCGTCTG
AAATCCCGCT TCGGCTGGGG GTTAACGGTC GCAATTGAAC CGCCAGAGCT GGAAACCCGC
GTGGCGATTC TGATGAAAAA GGCAGATGAA AATGACATTC GCCTGCCTGG TGAAGTTGCG
TTCTTTATTG CCAAGCGCCT GCGTTCTAAC GTGCGTGAGC TGGAAGGCGC ACTGAACCGC
GTCATCGCGA ACGCCAATTT TACCGGCCGC TCCATCACCA TCGATTTTGT GCGCGAGGCG
CTGCGCGATT TGCTGGCGTT GCAGGAAAAA CTGGTTACTA TCGACAATAT TCAAAAGACC
GTGGCGGAAT ACTATAAAAT CAAGGTAGCC GATCTACTGT CTAAACGTCG TTCCCGCTCG
GTGGCGCGTC CGCGCCAGAT GGCGATGGCG TTGGCGAAAG AACTGACGAA TCACAGCCTG
CCGGAAATTG GTGATGCTTT TGGCGGGCGT GACCATACGA CGGTGTTGCA TGCCTGCCGC
AAGATTGAGC AGTTGCGTGA AGAAAGCCAC GACATCAAAG AAGATTTTTC CAATTTAATC
AGAACTCTAT CGTCATAA
 
Protein sequence
MSLSLWQQCL ARLHDELPAT EFSMWIRPLQ AELSDNTLAL YAPNRFVLDW VRDKYLNNIN 
VLLNDFCGMD APLLRFEVGS KPLVQAISQP AQPHHKQVSA APQQQVRSAP VRPSWDNSPA
QAEHTYRSNV NPKHTFDNFV EGKSNQLARA AARQVADNPG GAYNPLFLYG GTGLGKTHLL
HAVGNGIIAR KPNAKVVYMH SERFVQDMVK ALQNNAIEEF KRYYRSVDAL LIDDIQFFAN
KERSQEEFFH TFNALLEGNQ QIILTSDRYP KEINGVEDRL KSRFGWGLTV AIEPPELETR
VAILMKKADE NDIRLPGEVA FFIAKRLRSN VRELEGALNR VIANANFTGR SITIDFVREA
LRDLLALQEK LVTIDNIQKT VAEYYKIKVA DLLSKRRSRS VARPRQMAMA LAKELTNHSL
PEIGDAFGGR DHTTVLHACR KIEQLREESH DIKEDFSNLI RTLSS