| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_4144 |
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| Symbol | ligB |
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| ID | 8117590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya zeae Ech1591 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012912 |
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| Strand | - |
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| Start bp | 4675241 |
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| End bp | 4676923 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644854520 |
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| Product | NAD-dependent DNA ligase LigB |
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| Protein accession | YP_003006419 |
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| Protein GI | 251791698 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.610084 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGATATC AATACGCGCT GGCGGCAGTG TGGTTTTTAG TGAGCGGTTT TGCCAACGCG
ACGCCTTGTC CGGCATGGTC GTCGGCGCGC GCTGAACGGG AGGTAACCCA ACTGGGGCAA
CAACTCACGC AGTGGGACAA TGCGTATTAC GAGCAGGGCC GGAGTCCGGT AGACGATCAG
GTTTATGACC AGTTGCGTCA AACGCTGGCC ACCTGGCAAC GCTGTTTTCA GTCGGATACC
GAACGTTTTG CAATACGCCT GTCGTCAACA GGTAAGCAAT CACATCCGGT GGCGCATACC
GGCCTGAAAA AACTGTCTGA ACCAACCGAG TTGAAACAGT GGGTGGCTCG GCATGATGGC
CTATGGGTAC AACCCAAGAT CGATGGCGTA GCGGTGACGC TGGTCTACGA ACAAGGGAAA
CTGGTGAGCG CCGTCAGTCG CGGCAATGGG CGTCAGGGCG AAGACTGGAC CGATAAGGTA
CGCCAGATTA ACGCGGTGCC GCAGGCGCTC TCCGGCATGT CCGGCCGCCA GATTTTTCAG
GGTGAGTTGT ATTTGCCGGT AACGGAACAC CGGCAGTACG TGTCCGGCGG CATCAATGCG
CGGGCGCAGG TGGCGGGTGA AATGCGGCGA AAGCAGCCGT CGCCGCTGTT GTCCCGCCTT
GGCGTATTTA TCTGGGCCTG GCCGGACGGC CCGGCAGACA TGCCGACGCG GCTGGCGAAA
TTACGGGAGA TGGGGTTTGG GCTGACCGCA GATTACACAC AAGCCATTTC CTCTCTGGAG
GCGGCGGCAC AGTGGCGTGA GCGCTGGTAT CGTGCGCCGC TGCCGTTTGT AACCGATGGC
GTCGTGTTAC GCCAGGCGAA GGAGCCGGCG GGTCGTTACT GGCAGGATAC CCCGGCGGAA
TGGGCCGTGG CCTGGAAATA CCCGTTGATG AATCAGGTGA CGGAGGTCAC CGGCGTTGAT
GTTGAAATAG GACGTACCGG CAGAATGACT GTGGTACTGC AACTGCAACC GGTCATGCTG
GATGACAAGA GCGTGAGTCG GGTCAATCTC GGCTCGGTTG GTCGCTGGCG ACAATGGGAT
GTTTTACCGG GGGATCGGGT CAGCATCAGT CTGGCGGGGT TGGGGATTCC CCGGCTTGAC
GCAGTGGTAT GGCGCGCAGC GGTGCGAGAG TCGATAACCG TTCCGGCTGT ATCGCCTTTT
GATGTTTTCA GTTGTTTGCA ATGGAGTCGG GAGTGCCAGC CGCAGTTTCT GGCTCGGCTG
GTATGGATGA GCGGTCGCAA CGGGTTGTCG CTCAGCGGTA TCAGCGAAGC GACCTGGAGG
CGCCTGGCGC AGCGCGGCAC GCTGGCCGAC GTGGTGTCCT GGCTGGCGCT GGAGCCCGCT
CAGTTGGCGG CGGCCGGTGA TTTCAACGAA CAACAGGCGG CGCGGATTTA TCGCCAGTTG
CAGCAGGCGC GCCGCCAGCC ATTGCGGCGC TGGCTGCTGG CATTAGGATT ACCCGTGCCC
TCCAGCGCCC GGTATGCGTT GGAGGGGGCC TCGCTCGAAC AGTTGCAACA ACGCTCAATC
GTGGAGTGGC AGCAGTTTTC CGGTATCGGC GCTCGGCGAG CACAGCGCAT TCGGGATTTT
CTGCATCACC CGGAAATTGT CCGCCAACTG GCATGGCTCA ATGAACAAGG CGTGAAATCA
TGA
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| Protein sequence | MRYQYALAAV WFLVSGFANA TPCPAWSSAR AEREVTQLGQ QLTQWDNAYY EQGRSPVDDQ
VYDQLRQTLA TWQRCFQSDT ERFAIRLSST GKQSHPVAHT GLKKLSEPTE LKQWVARHDG
LWVQPKIDGV AVTLVYEQGK LVSAVSRGNG RQGEDWTDKV RQINAVPQAL SGMSGRQIFQ
GELYLPVTEH RQYVSGGINA RAQVAGEMRR KQPSPLLSRL GVFIWAWPDG PADMPTRLAK
LREMGFGLTA DYTQAISSLE AAAQWRERWY RAPLPFVTDG VVLRQAKEPA GRYWQDTPAE
WAVAWKYPLM NQVTEVTGVD VEIGRTGRMT VVLQLQPVML DDKSVSRVNL GSVGRWRQWD
VLPGDRVSIS LAGLGIPRLD AVVWRAAVRE SITVPAVSPF DVFSCLQWSR ECQPQFLARL
VWMSGRNGLS LSGISEATWR RLAQRGTLAD VVSWLALEPA QLAAAGDFNE QQAARIYRQL
QQARRQPLRR WLLALGLPVP SSARYALEGA SLEQLQQRSI VEWQQFSGIG ARRAQRIRDF
LHHPEIVRQL AWLNEQGVKS
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