Gene Dd1591_3836 details

Gene Information

• Locus tag: Dd1591_3836
• ID: 8118789
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya zeae Ech1591
• Kingdom: Bacteria
• Replicon accession: NC_012912
• Strand: -
• Start bp: 4336156
• End bp: 4338102
• Gene Length: 1947 bp
• Protein Length: 648 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 644854203
• Product: regulatory protein CsrD
• Protein accession: YP_003006115
• Protein GI: 251791394
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.00572517
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGGTTGA CTGCCAGAAT ATCAATCGTA ATGACGTTGC TGACGACATT GGCCGTGGTG 
CTGATGTTGG TCAGCAGCAT TTTCAGTTTT GTGTGTTACA GCCAGCAACG GATGGAGCAT 
CAGCTCAGGG CGGTGGCGGC GAGTATCGAT CAGGCGTTGT TGGTACAGCC GCCCGACAAT 
ATCCAGTTCT GGTTGCCGGC GGTGATGAAA GCCGCCGGCA TTGTGGAACT GGAAATCCGC 
GATAATCATG AACGCCTCTT TTTCTTACGT TTGCCGGAAA TGTTGTCCGA CGCGGATGAA 
CGGGCGCTGT TTTATCGTCA CACCGCGTTA TCGCTGCTGC ATCACACTGA CGTGCGGGTC 
AATGTCACCT ATGCCGACCC GTTTTTTGGC GTACCGCGCT ATCTCAAGGC CATGTTTTCG 
ATGGTGCTGG CGATACTGAT GAGCGCCGTC GGCGTTTTTC ATGGCGTGCG CTGGGTTCGG 
CGTCAGATGG CAGGGCAGGA GCAACTGGAG AAACGGGCCC GACGGATTTT AGCGGGTGAA 
CGCGATACCG TGATGCATGG TTCGGTACAC GAATGGCCGG CCATGGCCAG CGGCGCTCTT 
GATCAGTTGC TGTTGGATCT GGTCGAGGCG CGTGAGGCTC GTAGTCGGGT CGATACCCTC 
ATTCGCTCAT TCGCGGCCCA GGATGCGCAA ACCGGTCTGA ATAATCGGCT GTTTTTCGAA 
AATCAGCTCG CCACACAATT GGAAGACCCG GAAGACGTCG GCACGCATGG CGTGGTTATG 
ATGATCCGCC TGCCGGACTT CGATACCTTG CAGGAAACGC ATGGCTACGG CGGTGTGCTT 
GAAGAATATC GCAATACGCT GATCAGCCTG CTGTCTACGT TTGTCCTGCG CTATCCCTCC 
GCGCTGTTGG CTCGTTACTA CCACAGTGAT TTTACGGTGC TGTTGCCGCA TCGGACGCTG 
AAAGAAGCGG ACAGTATCGC CAGCCAACTG GTGAAAGCCA TCGACATTCT GCCGATGACG 
CCGCTCATCG ATCGGGAAGA TATTCTGCAC ATCGGTATTT GCGCGTATCA CAGCGGGCAG 
ACCACCGAAC AGGTGATGGA AAGCGTGGAA GACGCCACCC GTAACGCGGT ATTGCAGGGC 
GGTAACGGCT GGTGCGTTTA TGACCGGTGG GTGCCGGAGA AAGGGCGCGG CAGCGTTAAA 
TGGCGCACAC TGCTGGAACA CACCCTGTTG CGCGGCGGGC CGCGCTTGTA TCAGAAACCG 
GCGATTACCT GCGATGGCGA GGTGCACCAT CGGGAAATGT TTAGCCGAAT TTATGATGGC 
ACCCAGGAAT TGCTGGAGGC GGAGTACATG CCGCTGGTGC GTCAGCTCGG CCTGACTTCC 
GGTTATGACC GCCAGTTGAT CACTCGGGTG ATCGCTCTCA CCGTCAGCTG GCAGGATTCG 
GTGCTGGCTT TCCCCATCAC GGTGGATTCG CTGCTGCAGC GGCCGTTCCT GCGCTGGTTG 
CGTGAAACAT TGCTCCAGTG TCCGAAAAAA CAGCGTCAGC GATTGTTGTT TGAGCTTGCA 
GAAGCCGATG TGTGTCAATA TATCGGCCGT TTGCGTCCGA TTCTGGCCAT GATTACCGGC 
TTAGGTTGTC GGCTGGCGGT GACGCAGGCC GGGCTGACGC TGGTCAGCAC CGCCTATATC 
AAGTCGCTGC ATGTGGAGGT GATCAAACTC CACCCGGGAT TGGTGCGTAG TCTGGATAAG 
CGGCCGGAGA ATCAGCTGTT TGTCAGCAGC CTGACCGAAG CCTGTAAGGG CACGCACGCT 
CAGGTGTTCG CCTCGGGCGT GCGAACGCGA GAAGAATGGC AGACATTGCT GGACAAAGGC 
GTTTGCGGCG GCCAGGGGGA TCTGTTCGCC GCCTCCGAAC CGGTAAGCAA CACGCTGAAA 
AAATATTCAC CGCGCACGTA TGTTTGA 

 

Protein sequence

MGLTARISIV MTLLTTLAVV LMLVSSIFSF VCYSQQRMEH QLRAVAASID QALLVQPPDN 
IQFWLPAVMK AAGIVELEIR DNHERLFFLR LPEMLSDADE RALFYRHTAL SLLHHTDVRV 
NVTYADPFFG VPRYLKAMFS MVLAILMSAV GVFHGVRWVR RQMAGQEQLE KRARRILAGE 
RDTVMHGSVH EWPAMASGAL DQLLLDLVEA REARSRVDTL IRSFAAQDAQ TGLNNRLFFE 
NQLATQLEDP EDVGTHGVVM MIRLPDFDTL QETHGYGGVL EEYRNTLISL LSTFVLRYPS 
ALLARYYHSD FTVLLPHRTL KEADSIASQL VKAIDILPMT PLIDREDILH IGICAYHSGQ 
TTEQVMESVE DATRNAVLQG GNGWCVYDRW VPEKGRGSVK WRTLLEHTLL RGGPRLYQKP 
AITCDGEVHH REMFSRIYDG TQELLEAEYM PLVRQLGLTS GYDRQLITRV IALTVSWQDS 
VLAFPITVDS LLQRPFLRWL RETLLQCPKK QRQRLLFELA EADVCQYIGR LRPILAMITG 
LGCRLAVTQA GLTLVSTAYI KSLHVEVIKL HPGLVRSLDK RPENQLFVSS LTEACKGTHA 
QVFASGVRTR EEWQTLLDKG VCGGQGDLFA ASEPVSNTLK KYSPRTYV