Gene Dd1591_3815 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDd1591_3815 
Symbol 
ID8117248 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDickeya zeae Ech1591 
KingdomBacteria 
Replicon accessionNC_012912 
Strand
Start bp4314115 
End bp4315548 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content57% 
IMG OID644854182 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_003006094 
Protein GI251791373 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.51503 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCAAG GTTTGCAACT CAGGCTCAGC CAGCAACTGG CTATGACACC GCAGTTACAG 
CAGGCCATCC GCCTGCTGCA GTTGTCCACG CTTGAACTCC AGCAGGAAAT CCAACAGGCG
CTGGAAAGCA ACCCGTTGCT GGAGCAGGCC GATATTCATG ACGAAGTGGA AACCCAGGAA
AGCAGCGACA GCGAAACGCT GGACACCCGC GAGGCGCTGG AGCAAAAAGA GATGCCCGAC
GAGTTGCCGC TCGACGCCGC CTGGGATGAA ATCTACACCG CCGGTACGCC GTCCGGCACC
ACCACCGACT ACCGTGACGA AGAGCTGCCG GTCTATCAGG GTGAAACCAC CCAGACACTA
CAGGATTACC TGATGTGGCA GGTGGAGCTG ACGCCGTTTT CCGATACCGA CGCCGCCATC
GCCACGTCCA TCGTGGATGC GGTGGACAGC ACCGGTTACC TGACGGTGTC GCTGGACGAT
ATCCGCGAGA GTATCGGTAA TGACGAGGTG ACGCTGGAAG AGGTGGAAGC GGTGCTCAAA
CGCGTACAGC GTTTTGACCC TGTCGGCGTG GCCGCCCGCG ATTTACGCGA ATGCCTGCTG
GTACAGCTGT CCCAGTTCGA CAGCGGCATT TCCCGTCTGG CTGAAGCCAA GCTTATCGTC
GGCGAATACC TTGATCTGCT CGCCAACCAT GACTTCCGCA CCCTCATTCG TACCAGCCGC
CTCAAAGAAG AGGTATTGAA AGAAGCGCTG GCGCTGATTC AATCGCTCGA TCCGCGCCCA
GGTCAGTCGA TCAATACCGG CGAATCCGAG TATGTGATTC CGGACGTACT GGTGCGCAAG
ATACAGGGAC ACTGGACGGT GGAGCTCAAT ACCGACAGCG TACCCCGGTT GCAGATCAAC
CAGCAGTATG CCGCCCTCGG CAACAGCGCG CGCAACGACA GCGACGGGCA GTTCATCCGC
AGCCATCTGC AGGAAGCCCG CTGGCTCATC AAGAGTCTGG AAAGCCGTAA CGATACCCTG
CTGAAAGTCA CCCGTTGTAT TGTGGAACAA CAGCAGGCGT TCTTCGAGCA CGGAGAGGAA
TTTATGAAAC CCATGGTGCT GGCGGATATC GCTCAGGCCG TGGAGATGCA CGAGTCCACC
ATTTCCCGCG TAACGACCCA GAAATTTCTG CACAGTCCGC GCGGTATTTT TGAGCTGAAG
TATTTCTTTT CCAGTCACGT CAACACCGAC AACGGCGGCG AGGCATCATC CACCGCCATC
CGTGCGCTGG TGAGAAAACT CATTGCAGCG GAAAATCCCG CTAAACCGCT AAGCGACAGC
AAACTGACCT CCCTGCTTTC CGAACAGGGA ATCATTGTGG CTCGCCGCAC TGTCGCCAAG
TATCGAGAGT CTTTATCTAT CCCGCCGTCA AACCAACGCA AACAGCTGGT TTGA
 
Protein sequence
MKQGLQLRLS QQLAMTPQLQ QAIRLLQLST LELQQEIQQA LESNPLLEQA DIHDEVETQE 
SSDSETLDTR EALEQKEMPD ELPLDAAWDE IYTAGTPSGT TTDYRDEELP VYQGETTQTL
QDYLMWQVEL TPFSDTDAAI ATSIVDAVDS TGYLTVSLDD IRESIGNDEV TLEEVEAVLK
RVQRFDPVGV AARDLRECLL VQLSQFDSGI SRLAEAKLIV GEYLDLLANH DFRTLIRTSR
LKEEVLKEAL ALIQSLDPRP GQSINTGESE YVIPDVLVRK IQGHWTVELN TDSVPRLQIN
QQYAALGNSA RNDSDGQFIR SHLQEARWLI KSLESRNDTL LKVTRCIVEQ QQAFFEHGEE
FMKPMVLADI AQAVEMHEST ISRVTTQKFL HSPRGIFELK YFFSSHVNTD NGGEASSTAI
RALVRKLIAA ENPAKPLSDS KLTSLLSEQG IIVARRTVAK YRESLSIPPS NQRKQLV