Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dd1591_3815 |
Symbol | |
ID | 8117248 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dickeya zeae Ech1591 |
Kingdom | Bacteria |
Replicon accession | NC_012912 |
Strand | + |
Start bp | 4314115 |
End bp | 4315548 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 644854182 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_003006094 |
Protein GI | 251791373 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.51503 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCAAG GTTTGCAACT CAGGCTCAGC CAGCAACTGG CTATGACACC GCAGTTACAG CAGGCCATCC GCCTGCTGCA GTTGTCCACG CTTGAACTCC AGCAGGAAAT CCAACAGGCG CTGGAAAGCA ACCCGTTGCT GGAGCAGGCC GATATTCATG ACGAAGTGGA AACCCAGGAA AGCAGCGACA GCGAAACGCT GGACACCCGC GAGGCGCTGG AGCAAAAAGA GATGCCCGAC GAGTTGCCGC TCGACGCCGC CTGGGATGAA ATCTACACCG CCGGTACGCC GTCCGGCACC ACCACCGACT ACCGTGACGA AGAGCTGCCG GTCTATCAGG GTGAAACCAC CCAGACACTA CAGGATTACC TGATGTGGCA GGTGGAGCTG ACGCCGTTTT CCGATACCGA CGCCGCCATC GCCACGTCCA TCGTGGATGC GGTGGACAGC ACCGGTTACC TGACGGTGTC GCTGGACGAT ATCCGCGAGA GTATCGGTAA TGACGAGGTG ACGCTGGAAG AGGTGGAAGC GGTGCTCAAA CGCGTACAGC GTTTTGACCC TGTCGGCGTG GCCGCCCGCG ATTTACGCGA ATGCCTGCTG GTACAGCTGT CCCAGTTCGA CAGCGGCATT TCCCGTCTGG CTGAAGCCAA GCTTATCGTC GGCGAATACC TTGATCTGCT CGCCAACCAT GACTTCCGCA CCCTCATTCG TACCAGCCGC CTCAAAGAAG AGGTATTGAA AGAAGCGCTG GCGCTGATTC AATCGCTCGA TCCGCGCCCA GGTCAGTCGA TCAATACCGG CGAATCCGAG TATGTGATTC CGGACGTACT GGTGCGCAAG ATACAGGGAC ACTGGACGGT GGAGCTCAAT ACCGACAGCG TACCCCGGTT GCAGATCAAC CAGCAGTATG CCGCCCTCGG CAACAGCGCG CGCAACGACA GCGACGGGCA GTTCATCCGC AGCCATCTGC AGGAAGCCCG CTGGCTCATC AAGAGTCTGG AAAGCCGTAA CGATACCCTG CTGAAAGTCA CCCGTTGTAT TGTGGAACAA CAGCAGGCGT TCTTCGAGCA CGGAGAGGAA TTTATGAAAC CCATGGTGCT GGCGGATATC GCTCAGGCCG TGGAGATGCA CGAGTCCACC ATTTCCCGCG TAACGACCCA GAAATTTCTG CACAGTCCGC GCGGTATTTT TGAGCTGAAG TATTTCTTTT CCAGTCACGT CAACACCGAC AACGGCGGCG AGGCATCATC CACCGCCATC CGTGCGCTGG TGAGAAAACT CATTGCAGCG GAAAATCCCG CTAAACCGCT AAGCGACAGC AAACTGACCT CCCTGCTTTC CGAACAGGGA ATCATTGTGG CTCGCCGCAC TGTCGCCAAG TATCGAGAGT CTTTATCTAT CCCGCCGTCA AACCAACGCA AACAGCTGGT TTGA
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Protein sequence | MKQGLQLRLS QQLAMTPQLQ QAIRLLQLST LELQQEIQQA LESNPLLEQA DIHDEVETQE SSDSETLDTR EALEQKEMPD ELPLDAAWDE IYTAGTPSGT TTDYRDEELP VYQGETTQTL QDYLMWQVEL TPFSDTDAAI ATSIVDAVDS TGYLTVSLDD IRESIGNDEV TLEEVEAVLK RVQRFDPVGV AARDLRECLL VQLSQFDSGI SRLAEAKLIV GEYLDLLANH DFRTLIRTSR LKEEVLKEAL ALIQSLDPRP GQSINTGESE YVIPDVLVRK IQGHWTVELN TDSVPRLQIN QQYAALGNSA RNDSDGQFIR SHLQEARWLI KSLESRNDTL LKVTRCIVEQ QQAFFEHGEE FMKPMVLADI AQAVEMHEST ISRVTTQKFL HSPRGIFELK YFFSSHVNTD NGGEASSTAI RALVRKLIAA ENPAKPLSDS KLTSLLSEQG IIVARRTVAK YRESLSIPPS NQRKQLV
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