Gene Dd1591_3813 details

Gene Information

• Locus tag: Dd1591_3813
• ID: 8117246
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya zeae Ech1591
• Kingdom: Bacteria
• Replicon accession: NC_012912
• Strand: +
• Start bp: 4312756
• End bp: 4313325
• Gene Length: 570 bp
• Protein Length: 189 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 644854180
• Product: lipopolysaccharide transport periplasmic protein LptA
• Protein accession: YP_003006092
• Protein GI: 251791371
• COG category: [S] Function unknown
• COG ID: [COG1934] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03002] lipopolysaccharide transport periplasmic protein LptA

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.277414
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATCCA ACCAAAAAAT TAATGTCTTA CACAGCATTC TGATCGCCAG CTCGCTTTTT 
GCCGTCAGCA TTCCGGCACT GGCGTTGACC GGAGACACCG AGCAACCCAT CCACATTACC 
TCCGACCAGC AAGCGCTGGA CATGCAGGGC AATGTGGTGA CGTTCACCGG CAACGTCCTC 
GTCACGCAGG GCTCAATAAA AGCACAAGCC GACAAGGTGG TCGTCACCCG TCCTAACGGC 
CAGCAAGGTC ATGAAGTGAT CGAAGGCTAT GGTAACCCGG CCACCTTCTA CCAAATGCAG 
GACAACGGTA AGCCGGTGAA AGGCCATGCC CAGAAAATGC GTTACGAGAT GGATAAGCAA 
CTGGTCATCC TGACCGGCGA TGCTTACCTG GAGCAACTGG ACAGCAACGT CAAGGGCGAC 
CGCATTACTT ATCTGGTGCA GCAGCAACAG ATGGAAGCCT TCAGTGATAA GGGTAAACGC 
GTCACGACCG TGCTGGTTCC GACACAGTTG CAGGACAAAG GCACGCAGAA TGGTGCCAAG 
CCGGCCGGCA AACCCGCCAA ACAACAGTGA 

 

Protein sequence

MKSNQKINVL HSILIASSLF AVSIPALALT GDTEQPIHIT SDQQALDMQG NVVTFTGNVL 
VTQGSIKAQA DKVVVTRPNG QQGHEVIEGY GNPATFYQMQ DNGKPVKGHA QKMRYEMDKQ 
LVILTGDAYL EQLDSNVKGD RITYLVQQQQ MEAFSDKGKR VTTVLVPTQL QDKGTQNGAK 
PAGKPAKQQ