| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_3461 |
|---|
| Symbol | |
|---|
| ID | 8117927 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 3932156 |
|---|
| End bp | 3934276 |
|---|
| Gene Length | 2121 bp |
|---|
| Protein Length | 706 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644853835 |
|---|
| Product | polynucleotide phosphorylase/polyadenylase |
|---|
| Protein accession | YP_003005752 |
|---|
| Protein GI | 251791031 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
|---|
| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCTAAATC CGATCGTTCG TAAATTCCAG TACGGCCAAC ATACCGTAAC GCTGGAAACC
GGTATGATGG CCCGTCAGGC TACTGCCGCT GTGATGGTTA GCATGGATGA CACTGCGGTA
TTTGTAACCG TTGTGGGTGC CAAACACGCT AAACCGGGGC AGGACTTTTT CCCGCTGACT
GTTAACTATC AAGAGCGTAC CTATGCGGCT GGCCGTATTC CCGGTGGTTT TTTCCGCCGT
GAAGGCCGCC CGAGCGAAGG CGAAACGCTG ATCTCCCGTT TGATTGACCG TCCGATTCGT
CCGCTGTTCC CAGATGGTTT CGTTAACGAA GTCCAGGTTA TTGCCACTGT GGTTTCCGTA
AATCCGCAGG TTAACCCGGA TATCGTTGCC ATGATCGGTG CTTCTGCGGC GCTGAGCCTG
TCGGGTATCC CGTTCAATGG CCCGATTGGT GCCGCTCGCG TTGGTTACAT CAACGATCAG
TACGTGCTGA ACCCGACGAC TGAAGAGCTG AAAACCAGCC GCCTGGACCT GGTAGTAGCA
GGTACCGAAG GCGCGGTGCT GATGGTGGAA TCCGAAGCGG ATCTGCTGAG CGAAGATCAG
ATGCTGGGTG CGGTGGTATT TGGTCATGAT CAGCAACAGA TTGTTATCGA AAACATCAAG
TCGCTGACGG CAGAAGCCGG CAAACCGAAG TGGAGCTGGC AGGCACCGGA CGTGAACGTC
GAACTGCACA ACCGTGTGCA GGCGCTGTCT GAAGCTCGTC TGGGCGACGC TTATCGCATC
ACTGAAAAAC AAGAACGCTA CGCGCAGGTT GATACCATCA AAGCTGACGT GGTTGCGGCT
CTGCTGGCAG AAGATGAAAC GCTGGACGAA AACGAACTGC GTGACATCCT CGGCAGCATC
GAGAAGAACG TGGTACGTAG CCGTGTGCTG CGTGGCGAAC CGCGTATCGA CGGTCGCGAA
AAAGACATGA TCCGTGGTCT GGATGTACGT ACCGGCGTGC TGCCGCGTAC TCACGGCTCC
GCGCTGTTCA CCCGTGGTGA AACTCAGGCG CTGGTGACCG CGACGCTGGG TACTGAGCGT
GATGCACAGA CTATCGATGA GTTGACCGGC GAGCGTACCG ATCGCTTCCT GCTGCACTAC
AACTTCCCTC CGTACTCCGT GGGTGAAACC GGTATGGTTG GGTCGCCGAA ACGCCGCGAA
ATCGGTCACG GTCGTCTGGC TAAACGTGGC GTGCTGGCTG TTATGCCGAA ACCGGAAGCC
TTCCCATACA CCGTACGTGT TGTGTCTGAA ATTACCGAAT CCAACGGTTC TTCTTCCATG
GCTTCCGTCT GTGGTGCTTC TCTGGCGCTG ATGGATGCCG GCGTACCGAT CAAAGCCGCC
GTTGCCGGTA TCGCGATGGG TCTGGTGAAG GAAGGCGACA ACTACGTTGT GCTGTCGGAT
ATTCTGGGTG ACGAAGACCA CCTGGGCGAT ATGGACTTCA AAGTAGCCGG TAGCCGTGAA
GGCGTGACCG CGTTGCAGAT GGACATCAAA ATCGAAGGTA TCACCCGCGA AATCATGCAG
GTGGCGCTGA ACCAGGCCAA GGGTGCGCGT CTGCACATTC TGGGCGTGAT GGAACAGGCT
ATCAGCACGC CGCGTGGCGA TATCTCCGAA TTCGCACCGC GTATCCACAC CATCAAGATC
AGCACCGACA AGATCAAAGA TGTGATCGGT AAAGGCGGTT CTGTTATCCG TGCGCTGACC
GAAGAAACCG GTACGACTAT CGAGATCGAA GACGACGGTA CGGTGAAGAT CGCCTCGACC
GACGGTGAAA AAGCCAAACA TGCGATTCGC CGTATCGAAG AGATCACGGC TGAAATCGAA
GTGGGCCGTA TCTATCAGGG TAAAGTGACC CGTATCGTTG ACTTTGGCGC TTTTGTTGCC
ATTGGCGGCG GCAAAGAAGG TCTGGTTCAT ATTTCTCAGA TCGCCGACAA GCGTGTCGAG
AAAGTGACTG ACTACCTGCA GATGGGCCAG GAAGTGCCGG TTAAGGTGCT GGAAGTGGAC
CGTCAGGGTC GTGTCCGTTT GAGCATAAAA GAAGCAACCG CTCAACCTCA GGAAGCTGCT
CCGGTTTCCG AGGCAGAATA A
|
|---|
| Protein sequence | MLNPIVRKFQ YGQHTVTLET GMMARQATAA VMVSMDDTAV FVTVVGAKHA KPGQDFFPLT
VNYQERTYAA GRIPGGFFRR EGRPSEGETL ISRLIDRPIR PLFPDGFVNE VQVIATVVSV
NPQVNPDIVA MIGASAALSL SGIPFNGPIG AARVGYINDQ YVLNPTTEEL KTSRLDLVVA
GTEGAVLMVE SEADLLSEDQ MLGAVVFGHD QQQIVIENIK SLTAEAGKPK WSWQAPDVNV
ELHNRVQALS EARLGDAYRI TEKQERYAQV DTIKADVVAA LLAEDETLDE NELRDILGSI
EKNVVRSRVL RGEPRIDGRE KDMIRGLDVR TGVLPRTHGS ALFTRGETQA LVTATLGTER
DAQTIDELTG ERTDRFLLHY NFPPYSVGET GMVGSPKRRE IGHGRLAKRG VLAVMPKPEA
FPYTVRVVSE ITESNGSSSM ASVCGASLAL MDAGVPIKAA VAGIAMGLVK EGDNYVVLSD
ILGDEDHLGD MDFKVAGSRE GVTALQMDIK IEGITREIMQ VALNQAKGAR LHILGVMEQA
ISTPRGDISE FAPRIHTIKI STDKIKDVIG KGGSVIRALT EETGTTIEIE DDGTVKIAST
DGEKAKHAIR RIEEITAEIE VGRIYQGKVT RIVDFGAFVA IGGGKEGLVH ISQIADKRVE
KVTDYLQMGQ EVPVKVLEVD RQGRVRLSIK EATAQPQEAA PVSEAE
|
|---|
| |