| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_3318 |
|---|
| Symbol | |
|---|
| ID | 8119054 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 3773042 |
|---|
| End bp | 3774520 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644853694 |
|---|
| Product | RND efflux system, outer membrane lipoprotein, NodT family |
|---|
| Protein accession | YP_003005615 |
|---|
| Protein GI | 251790894 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTACCCA AGTCTCCCGT TATCGTCCTT ACCGTGGCTG GTTTGTTAGC CGGTTGTGCT
GTCGGCCCTG ATTACACCCG GCCTGCCGTG TCAATGCAGG AAAAATACCT GGGTCAGGAG
GCTGTAAATC AACGACATGC CGCCACCCGC GCCGAGCTTC TGACGTGGTG GGAGGGGTTC
GGCGATCCGC AATTAACCCG ATTTATCACA CAGGCGTTGC AGCAGAACCT CTCTCTTGCG
CAGGCTTCCG CGCGCGTGGT GCAGGCCCGT GCCGGTCTTG GCGCGGCGAA TGCCGCACTG
CTGCCTTCCG GCAACATTTC CGGTCAGGCG GGCCGGGCCT ACCAGTCTGT CGAAACCCCG
TTGGGGAAAG TACTGAGTTC GGCGCCGGGT TTCGACCGCT ACGGTAATAG TTACGAGACT
GATCTCGGCG CCAGTTGGGA ACTGGATGTG TTCGGCGGCC TGCGCCGCGG GCGGGAAGCG
GCTCTGGCCG AGTATCAGGC ATCTGAAGCG GGAGTGGCGG CAACCCGTCT GGCGGTCGCC
GCACAAACCG CCGACATCTA CATCACGATT CGTGGATTAC AGGCCCGTCT GAACGTCGCC
CGTCGGCAAG TGCAAACGCA GCAGGATTTG CTCGCCACCA TCAACCGCTT GTATGACAAA
GGGTTGGCGG CGGAGCTTCA GGTAAGACAG GTCGAAGGCG CGTTGGCGCA GGTGCAGGCA
TCGGTGCCGG TTTTACAAAC CGCGCTGGAT ACGGCGATGA ACGCGCTGGA TGTGATGCTG
GGGGCGGCAC CGGGCACGAA CCGGGCAGTA CTGGCTGAGA CCAGCGCCAT TCCCGCCGCG
CCGCAAATCG CCGCGACCGG CACGCCGGGC GAGCTGCTTC GACGCCGGCC GGACCTGATC
GTGGCTGAGC GTCGCTTGGC CGCATCCAAC GCGCGTATTG GCGTCGCCGT TGCCGAGTAT
TACCCCAAAT TTTCCCTGAG TGGGCTGCTT GGCAGCGCGA CGACGGTATC CAGCGGCAAC
CTGTTTAGCA ACGGCGCCAG CCAATCGTCC GGGGTGATCG GCTTGCGCTG GCGGCTGTTC
GATTTCGGCC GTATCAATGC ACAGATCAAC CAGGCCAAGG GCCAGGAAGC TGAGATGCTG
GCCGCTTATC GGCTGTCGGT ATTGCAGGCG ACTGAAGATG TGGAAAACGC CTTCTCGGCG
CTGGTTAACA ATGAGGAGCA GGCCCGCGTG CTGACGCAAG GGGTTGATTC ACTCAGTCGA
GCGCGGGATG CCGCGTTTGC GGCTTATCAG CACGGCACCC TTAGCCTGAT AGAGGTGCTG
CAAGCCGACG AAAGTCTGCT GCGGGCTTCT GATGCACGAC TTCAGGCGCA AGCCGAATCC
GCCCGTGCGG CGGTCGCGGC GTTCAAAGCG CTCGGCGGCG GCTGGCAACC CGGTGAAACG
GCGGCGGCTC CCAGTCAGCA CAGCAATAGC GGCGTTTAA
|
|---|
| Protein sequence | MLPKSPVIVL TVAGLLAGCA VGPDYTRPAV SMQEKYLGQE AVNQRHAATR AELLTWWEGF
GDPQLTRFIT QALQQNLSLA QASARVVQAR AGLGAANAAL LPSGNISGQA GRAYQSVETP
LGKVLSSAPG FDRYGNSYET DLGASWELDV FGGLRRGREA ALAEYQASEA GVAATRLAVA
AQTADIYITI RGLQARLNVA RRQVQTQQDL LATINRLYDK GLAAELQVRQ VEGALAQVQA
SVPVLQTALD TAMNALDVML GAAPGTNRAV LAETSAIPAA PQIAATGTPG ELLRRRPDLI
VAERRLAASN ARIGVAVAEY YPKFSLSGLL GSATTVSSGN LFSNGASQSS GVIGLRWRLF
DFGRINAQIN QAKGQEAEML AAYRLSVLQA TEDVENAFSA LVNNEEQARV LTQGVDSLSR
ARDAAFAAYQ HGTLSLIEVL QADESLLRAS DARLQAQAES ARAAVAAFKA LGGGWQPGET
AAAPSQHSNS GV
|
|---|
| |