Gene Dd1591_3188 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDd1591_3188 
Symbol 
ID8121055 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDickeya zeae Ech1591 
KingdomBacteria 
Replicon accessionNC_012912 
Strand
Start bp3629005 
End bp3630243 
Gene Length1239 bp 
Protein Length412 aa 
Translation table11 
GC content54% 
IMG OID644853567 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_003005489 
Protein GI251790768 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00703451 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGATT CGAAGCACCA TCTGACCCGT CGTCATTTAT TACAGGGCGC CGCCGCCACC 
TGGTTACTGA GCATCAGCGG TGTTGGGCTG GCCGCCGTCT CGCAAGTGAT TGCCGTACGG
GTGTGGCCTG CTTCTGCGTA CAGCCGTGTC ACGCTCGAAT CCAGCCAGCC GCTAAAATAC
CGTCAGTTTA TGTTGGAAAA CCCTGATCGC CTGGTCGTCG ATATTGAGAA TGCCTCGTTG
AATAGTGTGC TGAAAAATGC AGGCCGACAA TTCGAACGAC GTGATCCTTT TATCAAGACG
GCTCGGGCCG GGCAGTTCGA CAAAAATACG GTACGTTTGG TGTTGGAGTT ACGGCAGAAG
GTGAATCCCC GGTTGTTTAC ACTGGCACCG GTCGCTGGCT TTCGGCATCG TCTGGTAATG
GATTTATACC CTGCCGCCGG TCGTTATGAC GATGCCGATG ACCCGCTGCT GGCGTTGCTG
GAGGATTACA ATAAAGGCGA CCTGGAGCGA ACGCTGCCGC CGGAAAGGCC CTACGATGGC
AAGGCCGGGC GCGAAAGACC GTTGATCATC ATGCTGGATC CGGGGCACGG TGGCGAAGAT
CCCGGCGCCA TCGGTAAAAA CCGGACCCGC GAAAAAGATG TGGTGCTGCA AATCGCCCGA
CGCTTGAAAG CGCTGATCGA GCGTGAGCAC AACATGAAAG CCTACATGAC CCGTAATGAA
GATGTGTTCA TTCCACTTAA GGTACGGGTG GCTAAAGCAC GCAAGCAACG CGCCGATTTG
TTTGTTTCTA TCCATGCCGA TGCCTTCAGC GACCGCTCAG CCCGCGGCTC TTCGGTGTTT
GCCTTGTCCA AAAAAGGCGC TACCAGTTCA GCGGCGCGTT ATCTGGCGCA AACGCAAAAT
GAGTCGGATT TGATAGGCGG GGTGAGTCTG AGCGGCGATC GTTATTTAGA CAGCACCATG
TTTGACATGG TGCAGACCGT CACCATTAAC GACAGCCTGA AATTCGGCAA AGAAATTTTG
CATCGTTTGG GAAAGGTGAA CCATTTACAC AAAAATAGCG TCGATCAGGC CGGTTTTGCG
GTACTGAAGG CACCGGATAT ACCATCAATA TTGGTGGAAA CGGCTTTTAT CAGCAACGTG
GAAGAGGAAC GCAAATTGCG TACCAGCCGT TTTCAGCAAC AGGTGGCGCA ATCGATCATG
GAAGGGATAA AAGCCTATTT CGCGGCTCAG GCGCGTTAA
 
Protein sequence
MSDSKHHLTR RHLLQGAAAT WLLSISGVGL AAVSQVIAVR VWPASAYSRV TLESSQPLKY 
RQFMLENPDR LVVDIENASL NSVLKNAGRQ FERRDPFIKT ARAGQFDKNT VRLVLELRQK
VNPRLFTLAP VAGFRHRLVM DLYPAAGRYD DADDPLLALL EDYNKGDLER TLPPERPYDG
KAGRERPLII MLDPGHGGED PGAIGKNRTR EKDVVLQIAR RLKALIEREH NMKAYMTRNE
DVFIPLKVRV AKARKQRADL FVSIHADAFS DRSARGSSVF ALSKKGATSS AARYLAQTQN
ESDLIGGVSL SGDRYLDSTM FDMVQTVTIN DSLKFGKEIL HRLGKVNHLH KNSVDQAGFA
VLKAPDIPSI LVETAFISNV EEERKLRTSR FQQQVAQSIM EGIKAYFAAQ AR