Gene Dd1591_3085 details

Gene Information

• Locus tag: Dd1591_3085
• ID: 8117783
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya zeae Ech1591
• Kingdom: Bacteria
• Replicon accession: NC_012912
• Strand: +
• Start bp: 3516017
• End bp: 3517879
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 644853462
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_003005386
• Protein GI: 251790665
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCTTTG ATATAGCGAA ATACCCCACG CTGGCGCTGG CGGAAAACCC TGAAGAACTG 
CGCCTGCTGC CAAGGGAAAG CCTGCCTAAA TTGTGCGATG AACTGCGACA ATATCTGTTG 
GACAGCGTCA GCCGCTCAAG CGGGCATTTT GCCTCGGGTC TGGGTACGGT CGAGCTGACC 
GTAGCGTTGC ATTACGTTTA CAACACGCCT TTCGACCACT TGGTATGGGA CGTCGGTCAC 
CAGGCTTATC CACATAAGAT CCTGACCGGG CGACGTGATC GCATCGCTAC CATCCGTCAA 
AAAGGCGGGC TGCACCCGTT TCCATGGCGT GGCGAAAGCG AATATGACGT CCTGAGCGTC 
GGCCATTCGT CGACGTCCAT CAGCGCCGGT ATCGGCATGG CCGTCGCCGC TGAACATGAA 
GGTCAGGGGC GGCGAACCGT CTGCGTGATT GGCGACGGCG CCATCACTGC CGGTATGGCG 
TTTGAGGCCA TGAATCACGC CGGCGATATC AAACCGGATA TGCTGGTCGT GCTGAACGAC 
AACGAAATGT CGATTTCCGA GAATGTCGGC GCGCTGAACA ACCACCTGGC GCAGTTGCTT 
TCCGGCAAGC TCTATTCCAC GTTGCGCGAG GGCGGTAAAA AGGTGTTATC CGGCCTGCCG 
CCTATCAAGG AACTGGTCAA ACGTACTGAA GAACACCTGA AAGGCATGGT GGTGCCCGGT 
ACGCTATTCG AAGAATTGGG CTTCAACTAT ATCGGCCCGG TGGATGGTCA CGACGTGCAG 
TCGCTGGTGC AAACCCTGAA AAACATGCGC AGCCTGAAAG GCCCGCAGTT GCTGCATATC 
ATGACCAAAA AAGGTAAAGG CTATGCGCCG GCCGAACAGG ACCCGATAAG CTGGCACGCC 
GTGCCGAAAT TCGACCCGGC CAGCGGGACA TTACCGAAAA GCAAAGAAGC GCTGCCGACT 
TACTCCGCCA TTTTCGGCGA GTGGCTGAGA GAAACCGCGG CGACAGACCA TCGGCTGATG 
GCCATTACCC CAGCGATGCG CGAAGGTTCC GGCATGGTGG CGTTTTCGCG TGAATATCCG 
CAGCAATACT TTGATGTCGC GATCGCCGAG CAACATGCGG TGACCTTTGC CGCCGGGCTG 
GCGATTGGCG GTTATCGCCC GGTGGTGGCG ATTTACTCCA CTTTCCTGCA ACGTGCCTAC 
GATCAGGTAA TTCATGACGT CGCCATTCAA AACCTGCCGG TCTTGTTTGC TATTGACCGC 
GGCGGCATCG TCGGGGCCGA CGGTCAAACA CATCAGGGCG CGTTTGACCT GTCGTTCCTG 
CGCTGTATCC CTCACATGGT GATCATGACG CCCAGCGACG AAAACGAGTG CCGGCTGATG 
CTGCATACCG GTTATCACTA TCAACAAGGC CCCTGTGCGG TGCGCTACCC GCGCGGCAAT 
GCGCTGGGCG TGGCGCTGAC CCCTCTGGAA ACGTTGCCTA TCGGCAAAGG CGTCGTAAAA 
CGTCAGGGTG AGAAGATTGC TATTCTGAAT TTCGGTACTC TGCTGCCGGA AGCTCAGCAG 
GCGGCCGACG CACTCAACGC CACACTGGTG GATATGCGAT TCGTCAAACC GCTGGATGAA 
GCGCTTATTG CCTCACTGGC CGCCAGCCAC GATGTGCTGG TGACGCTGGA AGAAAATGCC 
GTTATGGGTG GAGCCGGCAG CGGCGTGAAC GAATACCTGA TGGCGAAGCG CCTGGCCGTT 
CCGGTGCTCA ATATCGGCTT GCCGGACGCG TTTATTCCCC AAGGGTCCCA GGCGGAAATC 
CGCGCCGACC TGGCGCTGGA CGGCGCGGGT ATTGAACGCC GTATCCGCGA CTGGCTGGCC 
TGA 

 

Protein sequence

MTFDIAKYPT LALAENPEEL RLLPRESLPK LCDELRQYLL DSVSRSSGHF ASGLGTVELT 
VALHYVYNTP FDHLVWDVGH QAYPHKILTG RRDRIATIRQ KGGLHPFPWR GESEYDVLSV 
GHSSTSISAG IGMAVAAEHE GQGRRTVCVI GDGAITAGMA FEAMNHAGDI KPDMLVVLND 
NEMSISENVG ALNNHLAQLL SGKLYSTLRE GGKKVLSGLP PIKELVKRTE EHLKGMVVPG 
TLFEELGFNY IGPVDGHDVQ SLVQTLKNMR SLKGPQLLHI MTKKGKGYAP AEQDPISWHA 
VPKFDPASGT LPKSKEALPT YSAIFGEWLR ETAATDHRLM AITPAMREGS GMVAFSREYP 
QQYFDVAIAE QHAVTFAAGL AIGGYRPVVA IYSTFLQRAY DQVIHDVAIQ NLPVLFAIDR 
GGIVGADGQT HQGAFDLSFL RCIPHMVIMT PSDENECRLM LHTGYHYQQG PCAVRYPRGN 
ALGVALTPLE TLPIGKGVVK RQGEKIAILN FGTLLPEAQQ AADALNATLV DMRFVKPLDE 
ALIASLAASH DVLVTLEENA VMGGAGSGVN EYLMAKRLAV PVLNIGLPDA FIPQGSQAEI 
RADLALDGAG IERRIRDWLA