Gene Dd1591_2826 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDd1591_2826 
Symbol 
ID8120522 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDickeya zeae Ech1591 
KingdomBacteria 
Replicon accessionNC_012912 
Strand
Start bp3214837 
End bp3215355 
Gene Length519 bp 
Protein Length172 aa 
Translation table11 
GC content61% 
IMG OID644853196 
Producttype VI secretion system effector, Hcp1 family 
Protein accessionYP_003005128 
Protein GI251790407 
COG category[S] Function unknown 
COG ID[COG3157] Hemolysin-coregulated protein (uncharacterized) 
TIGRFAM ID[TIGR03344] type VI secretion system effector, Hcp1 family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAACTC CATGCTATAT CAGCATCGAA GGTAAAACGC AGGGTAACAT CACCGCCGGT 
GCCTTCACCT CCGACTCCGT CGGCAACATC TACGTGCAGG GCCACGAAGA CGAGATGCTG
GTGCAGGAAT TCAAACACAT CGTTACCGTC CCGACCGACC CGCAGTCCGG CCAGCCTGCC
GGTCAGCGCG TGCACAAGCC GTTCAAGTTC ACCGTCGCCC TGAATAAAGC CGTCCCGCTG
CTGTATAACG CGCTGGCCTC CGGCGAAATG CTGCCGACCG TGACCCTGAA GTGGTATCGC
ACCTCGGTGG AAGGCAAGCA GGAGCATTTC TTCACCACCA CCCTGACCGA CGCCACCATC
GTCGACATCA ACAACCAGAT GCCGCACTGC CAGGACCCGT CCAAGCAGGA TTACACCCAG
CTGATCGAAG TGTCGCTGGC CTACCGCAAG GTGGACTGGG AGCACACCGT GGCCGGCACT
TCCGGCTCTG ACGACTGGCG CGCGCCGATC GAAGCGTAA
 
Protein sequence
MPTPCYISIE GKTQGNITAG AFTSDSVGNI YVQGHEDEML VQEFKHIVTV PTDPQSGQPA 
GQRVHKPFKF TVALNKAVPL LYNALASGEM LPTVTLKWYR TSVEGKQEHF FTTTLTDATI
VDINNQMPHC QDPSKQDYTQ LIEVSLAYRK VDWEHTVAGT SGSDDWRAPI EA