| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_2825 |
|---|
| Symbol | |
|---|
| ID | 8120521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 3212635 |
|---|
| End bp | 3214671 |
|---|
| Gene Length | 2037 bp |
|---|
| Protein Length | 678 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644853195 |
|---|
| Product | type VI secretion system Vgr family protein |
|---|
| Protein accession | YP_003005127 |
|---|
| Protein GI | 251790406 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCCAACA GTACAGGATT GCAGTTTACC GTCAAAATCG GCGCATTGGC GGAAACCACC
TTCGCGGTGG TGGATTTTGA ACTCAGCGAG GCGCTGAACC AGCCGTTTGC GCTGTCGCTG
AGTCTTGCCA GCAGTCAGGC GGATATCGAT TTCGGCGCGG TGCTGGACCA GCCGTGCGAG
CTGCTGGTGT GGTACGAAGG CGAGCTGCAA CGACGGGTCA GCGGTATCGT CAGCCGCTTT
GCCCAGGGCG ACACCGGCTT TCGCCGCACC CGCTATCAGG CCGAGGTGCG CCCGGCGCTG
TGGCGGCTGG GGCTGCGCAC CAACGCCCGT ATTTTCCAGA CCCAAAAACC GGATGAGATC
ATCACGGAGC TGTTGCAGGA AGCCGGTATC AGCGACTTTG CCTTTGCCCT GCGCCATGAC
CACGCGGTGC GCGAATACTG CGTGCAGTAC CGCGAAAGCG ACCTGGCGTT CATCAACCGG
CTGGCCGCAG AAGAAGGGTT GTTCTACTAC CACGAATTCG AAGCCGGCAA GCACCGGGTG
GTGTTTGCCG ATGACGCCGG TGCGCTGACC AAAGGCCCCG AGCTGTTTTT TAACCTGGCA
ACACAAGGGC TGACCGAAGG GGCGTATGTG CGCCGTTTCC GCTACGCCGA AGCGGTCAGT
ACCGCCGAGG TGGCGCTGAA GGACTACAGC TTCAAAACCC CGGCCTACGG GTTGTTGCAC
AAGAAAACCA GCAACGAGCT GGCGCACCAG CGCGAATCCT ACCAGCACTT CGACTACCCC
GGCCGCTTCA AGCAGGACCC GAGCGGCAAG GCGTTTACCG GCTACCGGCT GGATGCGCTG
CGTGCCGGCG CGATGACCGG GGCGGGCGAA TCCAACGCCG CCGAACTGCG CCCCGGCAGT
ACCTTTACCC TGACCGAGCA CCCGAACCCG GCGTTTAATC TGGCCTGGCA GGTGGTGGCG
GTGGCCCACA GCGGCCAGCA GCCGCAGGCG CTGGAAGAAG AAAGTGGTGG CGAGCCGACC
ACCATTAGCA ACAGCTTCGA GGTGGTAAAA GCCACCACCA CCTGGCGTGC GGCGCTGCCG
TACAAACCGA TGGTGGACGG CCCGCAGATT GCCACCGTGG TGGGCCCGGC GGGCGAAGAG
ATTTACTGTG ATAGATTTGG CCGGGTGAAG CTGCAGTTCC CGTGGGACCG CTACGGCGCC
AGCGACGACC AGAGCTCCTG CTGGGTGCGG GTCAGTCAGG GCTGGGCCGG TGGTCAGTAC
GGGTTAATCG CCATTCCGCG TATCGGTCAT GAAGTGGTGG TGAGCTTTCT GGAAGGCGAC
CCGGACCAGC CGATTATCAC CGGGCGGACG TTTCACGCCA CCAACCCGTC GCCGTATGTC
TTGCCGGAGC ATAAAACCCG CACCACCTTA CGCACCGATA CGCACAAAGG CAGCGGCTTC
AACGAGCTGC GTTTTGAAGA TGAAGCCACC CGGGAACAGA TCTACCTGCA CGCGCAGAAA
GACATGGATG CGGTGATTAA CAACATTCAT CGCCAGAGCG TTGGGTTGGA TCAACATCTG
AGCGTGGCGA ATGACCAGTT CCAGCGGGTG GACCGCCATA GCCATCGCAC CATCGGGCAG
GATGATTTCG AACAAATCGG ACAGGATCAT CACCAGTCGG TCGGGCGTCA TTTTGTGCAA
CGCATCACCC AGTCATTCAA GCGTTTCATT GGCGGTGGCG AGATCACCCG TATTGACGGC
AGCCGCCAGA CCACGCTGTC CGGTTCGGAA GAAACACTGA TTGGCGCCCA TCAGCGCGTA
CTGGTCAATA CCGACAGTTA CCTCAAAGCC GCGGACATCG TGCTGGAAGC CGGACAATCG
CTGACCATCA AAGCGCCCGG CGGGTTTATC AAGATTGACG GCGCGGGTGT CACCATTTCC
GGCACGCTGG TGAAAATCAA CGACGGCGGC TCCGCCGGGG CGGGCACTGC GCCGGTGTCT
ATCGAACCCG AATCCCCCAC CAGACCGACG CTGCCCGATG CGCCGGACCG GCGTTAA
|
|---|
| Protein sequence | MANSTGLQFT VKIGALAETT FAVVDFELSE ALNQPFALSL SLASSQADID FGAVLDQPCE
LLVWYEGELQ RRVSGIVSRF AQGDTGFRRT RYQAEVRPAL WRLGLRTNAR IFQTQKPDEI
ITELLQEAGI SDFAFALRHD HAVREYCVQY RESDLAFINR LAAEEGLFYY HEFEAGKHRV
VFADDAGALT KGPELFFNLA TQGLTEGAYV RRFRYAEAVS TAEVALKDYS FKTPAYGLLH
KKTSNELAHQ RESYQHFDYP GRFKQDPSGK AFTGYRLDAL RAGAMTGAGE SNAAELRPGS
TFTLTEHPNP AFNLAWQVVA VAHSGQQPQA LEEESGGEPT TISNSFEVVK ATTTWRAALP
YKPMVDGPQI ATVVGPAGEE IYCDRFGRVK LQFPWDRYGA SDDQSSCWVR VSQGWAGGQY
GLIAIPRIGH EVVVSFLEGD PDQPIITGRT FHATNPSPYV LPEHKTRTTL RTDTHKGSGF
NELRFEDEAT REQIYLHAQK DMDAVINNIH RQSVGLDQHL SVANDQFQRV DRHSHRTIGQ
DDFEQIGQDH HQSVGRHFVQ RITQSFKRFI GGGEITRIDG SRQTTLSGSE ETLIGAHQRV
LVNTDSYLKA ADIVLEAGQS LTIKAPGGFI KIDGAGVTIS GTLVKINDGG SAGAGTAPVS
IEPESPTRPT LPDAPDRR
|
|---|
| |