| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_2775 |
|---|
| Symbol | |
|---|
| ID | 8119778 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | + |
|---|
| Start bp | 3148130 |
|---|
| End bp | 3149392 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644853146 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_003005078 |
|---|
| Protein GI | 251790357 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACAA AGAAACCGCA TCAATACCCG GTCGCCTGTA TTTTGTCGGC TCTGCTGCTG
GCGGCGCCCG GTCAGTCGGA ACCGAGCGGC ATGGCCGCCC GTCTGCCCGT TTCACTTAAA
CAGCTGTGCC GCCACGGCGT GTTGCTGGCG CTGGTCGGCA TACTGCTGAC CGGCTGCGAC
CGTCCCGATG CGCCGACCGA ATCGCCGCCG GCGCAGGTCA CCGTGATGAC CGCTGTGCCG
GTGTCCATTA CCCTGACCGA CGATCTGCCC GGCCGGGTGG CGGCGGTGCG CACGGCGGAA
ATCCGCCCAC AGGTAGGCGG TATCATTCAG CGCCGACTGT TTGAACAGGG TGCCGAAATC
CGTGCCGGAC AACCGTTATT CCAGATTAAC CCCGCGCCGT TCAAGGCTGA TGTCGATACC
GCCGGCGCCG CGCTGCAACG CGCCCAGTCG GTGCTGAACC GGGCGCAGAT TCAGGTCACG
CGCCTCAAAC CGCTGCTCAG CACCGGCGCC ATCAGCCAGC AAACCTATGA CGATGCGATA
GCGCAACGCG ACCAGGCCGC CGCCGATGTG GCGCAGACAC GCGCCACGCT GGCGCGCCGT
CAGCTTGACC TGACCTTCGC TACCGTCGAG TCGCCGATTG CCGGACGCAT CGATCAGGCG
TTGATCACCG AAGGCGCGCT GGTCAGCACC AACGACAGCA CCCCGCTGGC GCGGGTCCAG
CAGATAGACC AGGTGTATGT CGATGTGCGC CTGCCGGCCT CTTCGCTGGA GCAACTGCGC
GACATGCTAA GCAAACGCGC CGGCGGCAGT GACGGCGTAC CGGCGGAGAT TCTGCGCAGC
GATGGCCAGC CCTACCCGAT GTCGGCGCGC ATCCTGTTTT CCGGCGTGAA TGTGGATACC
GGCACCGGCG ACGTGCTGCT GCGCATTTTG GTGGATAACC CGCAACGCCA ACTGCTGCCG
GGGATGTTCG TGCGTGCGCG CGTCCCGCTC GGTCACCACG ACAACGCCCT GCTGGTGCCG
CAGCAAGCAG TGATGCGCAT CGCAGGAGAG GCCAAAATCT GGGTGATCGA CGACCGCAAC
AAAGCGCATG CCGTTACGGT GGAAACGGGC GAGCTGGTCA ACCGCCAGTA TCGCATCCGC
ACCGGGCTCG ACGCCGGTCA ACAGGTGGTT GTCGAAGGCG GCGAAAGACT GAGCGACGGG
GCCTGGGTGG CAACCCAGCA CTGGAAAATG GTGCCGTCCG CTACTGACGT AGCACCACGC
TAA
|
|---|
| Protein sequence | MNTKKPHQYP VACILSALLL AAPGQSEPSG MAARLPVSLK QLCRHGVLLA LVGILLTGCD
RPDAPTESPP AQVTVMTAVP VSITLTDDLP GRVAAVRTAE IRPQVGGIIQ RRLFEQGAEI
RAGQPLFQIN PAPFKADVDT AGAALQRAQS VLNRAQIQVT RLKPLLSTGA ISQQTYDDAI
AQRDQAAADV AQTRATLARR QLDLTFATVE SPIAGRIDQA LITEGALVST NDSTPLARVQ
QIDQVYVDVR LPASSLEQLR DMLSKRAGGS DGVPAEILRS DGQPYPMSAR ILFSGVNVDT
GTGDVLLRIL VDNPQRQLLP GMFVRARVPL GHHDNALLVP QQAVMRIAGE AKIWVIDDRN
KAHAVTVETG ELVNRQYRIR TGLDAGQQVV VEGGERLSDG AWVATQHWKM VPSATDVAPR
|
|---|
| |