| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_2678 |
|---|
| Symbol | |
|---|
| ID | 8119120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 3040696 |
|---|
| End bp | 3042810 |
|---|
| Gene Length | 2115 bp |
|---|
| Protein Length | 704 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644853052 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_003004985 |
|---|
| Protein GI | 251790264 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00160385 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTTC GGGCATTATA TGCGTTGACG CCATTATTTT TATTTGCACA GGCTAACGCA
GCAGATAGCA CAAACAAGAA TGACAATGAA ATGGTGGTGA CGGCATCCCG AACGGATACC
GAGAAAAAAG ATTCACCCCA GGTTGTGACG ATCATTACTA AAGAGCAGAT CGAACAACAG
CGCCAAATTA CCAGCGACTC TTCCCAGATA TTAAGTAACT TATTGCCGGC AATGGCGCCA
GGGCGCCAGA AAATGAGCGG CAGCGGTGAA ACCTTCCGTG GCCGTGCTCC ACTGGTTTTA
GTGGATGGTA TTCCGCAGTC TAACCCGTTG CGCCCCACCG GGCGTGAAAT GAGGACTATC
GATTTCGCGA TGGTGGAACG CATTGAAGTG ATCCACGGCG CCAGTGCCAG TAATGGTATG
GGGGCGACCG GCGGGGTCAT CAATATCATT ACCCGCCGAC CGGAACCGGG TTCGTTCAAC
CAGCATTTTA GCGTCGAAAC TACCTCGCCG ACCAAAGTCA GCTCGGACAG CATGAGCTAC
AAAACTACCT ACGGGTTCAG TGGCCGTGAA GAGTATCTGG ATTACCTGTT TTCGGTCAGT
TACGAAGATC AGGGGCTGTT TATGGATGGG AAGGATCGCC CCATCGGGGT TGATAACACC
CAGGGCGATT TGATGGATTC CCGCGCCTAC GATGTGATGG CGAAAGTCGG TTATTGGTTG
GATAACGACC AGCGGATACA GTTCAGCCTG AACCGTTATC AGATCAAGGG CAAGATGAAC
TACTTAGGCG TCACCGGCGA TCGTAATAAC GGCATTGCAG CTACCTCGGT ATCCGGGCGC
CCGATCGGAG ACGCGCCGAT GAATAGCGTC TGGAGCACCA GCGCCACCTA CGATAACTAC
AATCTGGCGG GCATGAAGCT GAACTCGCTG GTGTATTACC AAAACTACGA GTCGTTATTC
GGCGCCGATA ACTCGGGCTC TTTCCAGGAT ATCCGCATTG CACCGCGCAA TCAGTTATAT
GACCAGTCAC GGGTGACCTC CAGCCGTTAC GGTAGCAAGG TGGCGTTGAC CAAAGACGAT
ATCTGGGACG ATTACCTGAA AGCGACCGTC GGGTTCGATA CCCTGTTCGA TACCGGTAAG
CAGGACCTCT GGCTGACCAA ACGTGTGTAT GCACCGCAGA TGGAATACAC CGATCTGTCG
CCGTTCATGC AGTTCGATAT TCAGCCGATC GATTCGCTGA AAATTACCAC CGGAGTGCGC
TATGAGTACG CGCGTCTGGA TATCGACAGT TTCCGCACGG TGGCGGCCAG TACCGTAAGC
GCACCTAATA ACAGCGTGGA TGTGCAGGGT GGTCGCCTGA GTTTCAACAA GACGCTGTAC
AACGTTGGTG CGGTGTGGAC CACGCCTTAT CAGCCGCTGA GCCTGTTCGC CAACTACTCG
CAGGGCTTCG GTATTCCGGA TGTAGGCCGT ACGTTACGGA CCATTAGAAC CGCCGGCCAG
TCGGTCAGTA TGCTGCAGTT GGAACCGATT GTGACGGACA ACGTTGAAAC CGGCTTCCGC
ATCCAAAAAG ACCCGGTGGA GTTTGAACTG AGTTACTACC GCTCGACCTC CAAGCTGGGC
GAGCGCGTGG TGGATGTGAA CGGCACTTTC CAGAGCGAGC GCCAGAAAAC CCGTATCGAC
GGCATCGAAA CCTCGCTGGG TTATAAGGTG AATGACGATC ACCGCCTGAA AGTCGGTTAT
TCCCATATTC AGGGGTGGTT CGATGACGAT GGCAACGGCA GTCTCGATAG TAAGCTGGAT
GGTTTGAATA TTCCGCCGGA TCGTCTGACC GCCAGTTGGT CTGCGAATTG GACGCCGCAG
TGGTCCTCCT TTATTCAGGC TAATTATACC TTTGATCGAA TTATGGATAA CCGTCAGCAG
GACTTTAATG GATATGTCCT GTTCGATGCC GCCGTCGGTT ATAAATTACC GAAAGGTAAA
ATTAATCTGG CGGTCTCTAA CCTGTTTGAC AAGGAGTACA TCACTTATTA TTCGCAAAGC
GCGATTGTGA ACCCACTGCG TTATTTCTCC GGTCGGGGAA GAACCGTGAC GTTAGGTTAT
AGCGTTGACT TTTGA
|
|---|
| Protein sequence | MKVRALYALT PLFLFAQANA ADSTNKNDNE MVVTASRTDT EKKDSPQVVT IITKEQIEQQ
RQITSDSSQI LSNLLPAMAP GRQKMSGSGE TFRGRAPLVL VDGIPQSNPL RPTGREMRTI
DFAMVERIEV IHGASASNGM GATGGVINII TRRPEPGSFN QHFSVETTSP TKVSSDSMSY
KTTYGFSGRE EYLDYLFSVS YEDQGLFMDG KDRPIGVDNT QGDLMDSRAY DVMAKVGYWL
DNDQRIQFSL NRYQIKGKMN YLGVTGDRNN GIAATSVSGR PIGDAPMNSV WSTSATYDNY
NLAGMKLNSL VYYQNYESLF GADNSGSFQD IRIAPRNQLY DQSRVTSSRY GSKVALTKDD
IWDDYLKATV GFDTLFDTGK QDLWLTKRVY APQMEYTDLS PFMQFDIQPI DSLKITTGVR
YEYARLDIDS FRTVAASTVS APNNSVDVQG GRLSFNKTLY NVGAVWTTPY QPLSLFANYS
QGFGIPDVGR TLRTIRTAGQ SVSMLQLEPI VTDNVETGFR IQKDPVEFEL SYYRSTSKLG
ERVVDVNGTF QSERQKTRID GIETSLGYKV NDDHRLKVGY SHIQGWFDDD GNGSLDSKLD
GLNIPPDRLT ASWSANWTPQ WSSFIQANYT FDRIMDNRQQ DFNGYVLFDA AVGYKLPKGK
INLAVSNLFD KEYITYYSQS AIVNPLRYFS GRGRTVTLGY SVDF
|
|---|
| |