| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_2587 |
|---|
| Symbol | |
|---|
| ID | 8117995 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 2937922 |
|---|
| End bp | 2938617 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644852966 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_003004899 |
|---|
| Protein GI | 251790178 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCTCG ACTTTAGTAC TGTATTAACA GGCCATTATG GTGCGATGGT CGTGCAAGGC
GCGACTGTTA CGCTGGAACT GGCGCTGGGT GCCTGGCTGC TGGCCATGTT TATCGCACTG
TTGCTGTTGG TTATCCGTCT GACTGAACAC CGCGTCGCCA CGCGGCTGGT GGCGGCATAC
ATCTCTTATC ACCGCAATGT GCCCACGCTT ATCCAATTGA TGATGTGGTA TTTCGCCATT
CCGACGCTGC TGCCGGAATC GGTACAAGGT TGGATCAACG CGTTCAATGC CGAGTTTCTT
TTCTCGATGT TCGCATTGGG ATTATGTCAG GCGGCCTATT TCTCCGAAGA CATTCGCAGC
GGCCTGCGCG CCATCCCCGA TGGACAAAAT GAGGCCGCGC GCGCACTGGG AATGAGTTAT
ATGCGGGCGA TGCGGGAGGT GATTTTGCCG CAGGGGATCC GCAATGCGCT GCCTGCGTTG
ATTAACCACA CGGTGTTGTT GTTTAAAAAT ACCAGTCTGG CGATGGTCAT CGGCGTGGCT
GAATTGACGT ATGTCACACG CGATATTGAA AATCAGACCT TCCACACCTT CGAAGCGTAT
GTGATTGGCA CGCTGGGATA TCTGGCATTT TCACTGTTGC TGATGGGGCT GGGGGCGCTG
CTGGGGAGTC ACTTTCAACG CGTGTATGCG AGGTAA
|
|---|
| Protein sequence | MALDFSTVLT GHYGAMVVQG ATVTLELALG AWLLAMFIAL LLLVIRLTEH RVATRLVAAY
ISYHRNVPTL IQLMMWYFAI PTLLPESVQG WINAFNAEFL FSMFALGLCQ AAYFSEDIRS
GLRAIPDGQN EAARALGMSY MRAMREVILP QGIRNALPAL INHTVLLFKN TSLAMVIGVA
ELTYVTRDIE NQTFHTFEAY VIGTLGYLAF SLLLMGLGAL LGSHFQRVYA R
|
|---|
| |