Gene Dd1591_2559 details

Gene Information

• Locus tag: Dd1591_2559
• ID: 8120414
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya zeae Ech1591
• Kingdom: Bacteria
• Replicon accession: NC_012912
• Strand: +
• Start bp: 2919149
• End bp: 2921005
• Gene Length: 1857 bp
• Protein Length: 618 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 644852945
• Product: type VI secretion system Vgr family protein
• Protein accession: YP_003004878
• Protein GI: 251790157
• COG category: [S] Function unknown
• COG ID: [COG3501] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR01646] Rhs element Vgr protein; [TIGR03361] type VI secretion system Vgr family protein

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCCAACA GTACAGGATT GCAGTTTACC GTCAAAATCG GCGCATTGGC GGACACCACC 
TTCGCGGTGG TGGATTTTGA ACTCAGCGAG GCGCTGAACC AGCCGTTTGC GCTGTCGCTG 
AGCCTTGCCA GCAGTCAGGC CGATATCGAC TTCGGCGCGG TGCTGGACCA GCCGTGCGAA 
TTGATGGTGT GGTACGAAGG CGAATTGCAG CGCCGAGTCA GCGGTATCGT CAGCCGCTTT 
GCCCAGGGCG ACACCGGCTT TCGTCGCACC CGTTATCAGG CCGAGGTGCG CCCGGCGCTG 
TGGCGGCTCG GTCTGCGCAC CAACGCCCGT ATTTTCCAGA CCAAAAAACC GGATGAGATT 
ATCACCGAAC TGTTGCAGGA AGCCGGTATC AGCGACTTTG CCTTTGCCCT GCGCCATGAC 
CACGCCGTCC GTGAATACTG CGTGCAGTAC CGCGAAAGCG ACCTGGCGTT CATCAACCGG 
CTGGCTGCAG AAGAAGGGAT GTTCTACTAC CACGAGTTTG AAACCGGTAA GCACCGGGTG 
GTGTTTGCCG ATGACGCCGG TGCGCTCAGC AAAGGCCCCG AGCTGTTCTT CAATCTCGCC 
ACGCAGGGGC TGAGCGAAGG GGCGTATGTG CGCCGTTTCC GCTACGCCGA AGCGGTGAGC 
ACCGCTGCGG TGGAACTGAA GGATTACAGC TTCAAAACCC CGGCGTATGG CCTGTCGCAC 
AAGAAAACCA GCAACGAGCT GGCGCACCAG CGCGAATCCT ACCAGCACTT TGATTACCCC 
GGCCGCTTCA AACTGGACCC GAGCGGCAAG GCGTTTACCG GCTACCGGCT GGATGCGCTG 
CGTGCCGGGG CGATGACCGG GGCGGGTGAA TCCAACGCCG CCGAACTGAG GCCGGGCAGC 
ACCTTTACCC TCACCGAGCA CCCGAACCCG GCGTTTAACC TGGCCTGGCA GGTGGTGGCG 
GTGACCCACA GCGGGCAGCA GCCGCAGGCG CTGGAAGAGG AAAGCGGCGG CGAGCCGACC 
ACCATCAGCA ACAGTTTCGA GGTGGTGAAA GCCACCACCA CCTGGCGGGC GGCCATGCCG 
TACAAGCCGA TGGTGGACGG CCCGCAGATT GCCACCGTGG TCGGCCCGGC GGGCGAAGAG 
ATTTACTGCG ACGAGTTTGG CCGGGTGAAG CTGCAGTTCC CGTGGGACCG CTACGGTGCC 
AGCGACGACC AGAGCTCCTG CTGGGTGCGG GTCAGTCAGG GCTGGGCCGG TGGCCAGTAC 
GGCTTGATTG CCATTCCGCG CATCGGCCAT GAAGTGGTGG TGAGTTTCCT GGAAGGCGAC 
CCGGACCAGC CGATCATCAC CGGTCGCACC TTTCACGCCA CCAATCCTTC GCCGTATCCG 
CTACCGGCTA ACAAAACCCG CACCTCGCTG CGCACCAGTA CCCATAAAGG GGCCGGGTTC 
AACGAACTGC GCTTTGAAGA CCAGGCCGGG CAGGAAGAGG TGTTTATCCA CGCCCAGAAG 
GACATGAATA CGGTGGTGCT GAATAACCGC AGCACGGCGG TCAACGCCAG CCACACCGAG 
AATGTCGGTG GCGACCAGAC GGTGGTGGTG CAGCACAACC AGACGTTTAG CATCGAGCAA 
AACCAGAATA CTGGGATAAA AGGTGCTCAG ATTATCAGCG TGGGTAATGG ACGCCAGACC 
AGCGTGACAA CAACCGATAC CTTGACGGTC AGCGGCGATG TGACAGTTGT GTCAACGGGA 
GGGAACATTA AACTGTCTAC TGCGGGTGGA TATATTTCCA TCGATCACAC TGGTGATATT 
AGCATTGTGG GCAATCATCT GATGCTAAAT GGTGTAAGAA TCGATCTAAA CCAGTAA 

 

Protein sequence

MANSTGLQFT VKIGALADTT FAVVDFELSE ALNQPFALSL SLASSQADID FGAVLDQPCE 
LMVWYEGELQ RRVSGIVSRF AQGDTGFRRT RYQAEVRPAL WRLGLRTNAR IFQTKKPDEI 
ITELLQEAGI SDFAFALRHD HAVREYCVQY RESDLAFINR LAAEEGMFYY HEFETGKHRV 
VFADDAGALS KGPELFFNLA TQGLSEGAYV RRFRYAEAVS TAAVELKDYS FKTPAYGLSH 
KKTSNELAHQ RESYQHFDYP GRFKLDPSGK AFTGYRLDAL RAGAMTGAGE SNAAELRPGS 
TFTLTEHPNP AFNLAWQVVA VTHSGQQPQA LEEESGGEPT TISNSFEVVK ATTTWRAAMP 
YKPMVDGPQI ATVVGPAGEE IYCDEFGRVK LQFPWDRYGA SDDQSSCWVR VSQGWAGGQY 
GLIAIPRIGH EVVVSFLEGD PDQPIITGRT FHATNPSPYP LPANKTRTSL RTSTHKGAGF 
NELRFEDQAG QEEVFIHAQK DMNTVVLNNR STAVNASHTE NVGGDQTVVV QHNQTFSIEQ 
NQNTGIKGAQ IISVGNGRQT SVTTTDTLTV SGDVTVVSTG GNIKLSTAGG YISIDHTGDI 
SIVGNHLMLN GVRIDLNQ