| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_2381 |
|---|
| Symbol | rumB |
|---|
| ID | 8120793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 2727015 |
|---|
| End bp | 2728145 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 644852765 |
|---|
| Product | 23S rRNA methyluridine methyltransferase |
|---|
| Protein accession | YP_003004701 |
|---|
| Protein GI | 251789980 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.624238 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATGTG CCCGCTATAA CGACGGTTCG TGCCGTTCCT GTCAATGGCT GGAAACCGCC
TACCCGCAGC AGGTAACCAA TAAGCAGCAA CATCTGCTCG GGTTGCTGGC CGCTCATCCG
GTTCAACGCT GGCTGACGCC GGTAACCTCG GCGGAAAACG CTTTTCGCAA TAAAGCCAAG
ATGGTGGTCA GCGGCAGTGT CGAACGCCCG TTGCTGGGAA TGTTGCATCG TGACGGTTCG
CCGGTTGATC TTTGCGATTG CCCGCTCTAT CCCGACAGTT TTGCGCCGGT GTTTCGTGTA
TTGAAAACGT TTATCGCCCG CGCCGGACTG ACGCCCTATA ACGTCGCCCG ACGCCGGGGT
GAACTGAAAT ACCTGCTGTT AACGCAAAGC ACCTTGAGCG GCCACTTCAT GCTGCGTTTT
GTGCTGCGCT CCGACGCCAA GCTGGCGCAA CTGCGTGCCG CGTTGCCGTG GCTACAACAG
CAGTTGCCGC AGTTGACGGT GATATCGGCC AATATTCAAC CTGTTCATCA GGCGATATTG
GAAGGGGAAC TGGAGATGCC GCTGACGGAG GCACAGGCGT TGGAAGAGCG CTTTAATCAG
GTGCCGCTGT ATATTCGGCC GCAAAGCTTC TTCCAGACCA ACCCGCAGGT GGCGGCTGCC
TTGTATGATA CCGCCCGGCA GTGGGTGTCG GCGTTGCCGG TACGCAGTTT GTGGGATCTG
TTCTGTGGCG TGGGCGGATT CGGCCTGCAT TGTGCCGGAG CCGATACACC GCTCACCGGT
ATTGAGATTA GCCCTGAAGC CATTGCCTGT GCCCGACGTT CGGCGGCACA ACTGGGGCTG
ACGAACGTCA GTTTTGCCGC GCTTGATTCC ACCCGCTTTG CCGTCGGCGA AGCACAGACG
CCGGATCTGG TGATCGTCAA TCCGCCCCGG CGCGGTATCG GCGCTGAATT GTGCGATTAC
CTGAGCCACA TGGCGCCGCC GTATCTTCTT TACTCCAGCT GCAACGCCGA AAGTATGGCG
AAAGACATCA CACGGCTGCC GGCGTATCAG ATACGGCAGG TACAGTTATT CGATATGTTC
CCGCATACCG CGCATTACGA GGTGCTAACG CTACTGCAAC GGCGTGTTTA A
|
|---|
| Protein sequence | MQCARYNDGS CRSCQWLETA YPQQVTNKQQ HLLGLLAAHP VQRWLTPVTS AENAFRNKAK
MVVSGSVERP LLGMLHRDGS PVDLCDCPLY PDSFAPVFRV LKTFIARAGL TPYNVARRRG
ELKYLLLTQS TLSGHFMLRF VLRSDAKLAQ LRAALPWLQQ QLPQLTVISA NIQPVHQAIL
EGELEMPLTE AQALEERFNQ VPLYIRPQSF FQTNPQVAAA LYDTARQWVS ALPVRSLWDL
FCGVGGFGLH CAGADTPLTG IEISPEAIAC ARRSAAQLGL TNVSFAALDS TRFAVGEAQT
PDLVIVNPPR RGIGAELCDY LSHMAPPYLL YSSCNAESMA KDITRLPAYQ IRQVQLFDMF
PHTAHYEVLT LLQRRV
|
|---|
| |