| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_2339 |
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| Symbol | rpsA |
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| ID | 8118944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya zeae Ech1591 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012912 |
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| Strand | - |
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| Start bp | 2674664 |
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| End bp | 2676373 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644852724 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_003004660 |
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| Protein GI | 251789939 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00489204 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGACGTTA AATTTAAAAA CCCAAAGATT ATCAACATGA CTGAATCTTT TGCTCAACTC
TTTGAAGAAT CCCTGAAAGA AATCGAAACC CGTCCGGGTT CCATCGTTCG CGGCGTTGTG
GTTGCCATTG ATAAGGACGT AGTCCTGGTT GATGCCGGCC TGAAATCTGA ATCTGCCATT
CCGGTAGAAC AGTTTAAAAA CGCGCAGGGT GAAATTGAAA TCCAGGTTGG TGATGAAGTA
GACGTAGCTC TGGACGCGGT AGAAGACGGC TTCGGCGAAA CGCTGCTGTC TCGTGAAAAA
GCAAAACGTC ACGAAGCATG GCTGATGCTG GAAAAAGCTT ACGAAGAAGC TGCCACTGTT
ACCGGTGTTA TCAACGGTAA AGTGAAAGGC GGTTTCACCG TTGAGCTGAA CGGTATTCGT
GCGTTCCTGC CAGGTTCTCT GGTTGATGTT CGTCCGGTAC GTGACACCCT GCATCTGGAA
GGCAAAGAGC TTGAGTTCAA AGTAATCAAG CTGGACCAGA AACGTAATAA CGTCGTTGTT
TCCCGTCGTG CTGTTATCGA GTCTGAAAAC AGTGCCGAGC GCGATCAACT GCTGGAAAAC
CTGCAGGAAG GCATGGAAGT CAAAGGTATC GTTAAGAACC TCACTGACTA CGGTGCGTTC
GTTGACCTGG GTGGCGTTGA CGGTCTGCTG CACATCACCG ATATGGCCTG GAAACGCGTT
AAGCATCCGA GCGAAATCGT CAATGTGGGC GACGAAATCA CTGTTAAAGT GCTGAAATTC
GACCGCGAGC GTACTCGTGT TTCCCTGGGT CTGAAACAGC TGGGCGAAGA TCCGTGGGTC
GCTATTGCTA AGCGTTACCC GGAAGGCACC AAGCTGACTG GCCGTGTAAC CAACCTGACT
GATTACGGCT GCTTCGTAGA AATCGAAGAA GGCGTTGAAG GTCTGGTACA CGTATCCGAA
ATGGATTGGA CCAACAAGAA CATCCATCCG TCCAAAGTGG TTAACGTGGG CGACGTGGTT
GAAGTTATGG TTCTGGATAT CGACGAAGAA CGTCGTCGTA TCTCCCTGGG CCTGAAGCAG
TGCAAAGCCA ATCCGTGGCA GCAGTTCGCT GAAACCCACA ACAAGGGTGA CCGTGTAGAA
GGTAAGATCA AGTCTATTAC TGACTTCGGT ATCTTCATCG GTCTGGATGG CGGCATTGAT
GGTCTGGTGC ACCTGTCCGA CATCTCCTGG AACGTGGCTG GCGAAGAAGC CGTTCGCGAA
TACAAGAAAG GTGACGAAAT CGCCGCTGTC GTACTGCAGG TTGACGCAGA GCGCGAGCGC
ATCTCTCTGG GCGTGAAACA ACTGGCTGAA GACCCGTTCA ACAACTACCT GTCTGTTAAC
AAGAAAGGTG CGATTGTTAC AGGTAAAGTC ACTGCAGTTG ACGCCAAAGG TGCTACAGTT
GAATTAGCTG ATGGCGTTGA AGGTTACCTG CGTGCTTCTG AAGCATCTCG CGACCGTATC
GAAGACGCGA CCCTGGTTCT GAACGTAGGT GATGAGATCG AAGCCAAATA CACCGGCGTT
GATCGTAAGA ACCGCGTTGT TAGCCTGTCC ATCCGTGCCA AGGATGAAGC TGACGAGAAA
GATGCTATTG CTTCTGTTAA CAACAAACAG GAAGAAAGCA ATTTCTCTAA CGCCATGGCA
GAAGCTTTCA AAGCTGCAAA AGGCGAGTAA
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| Protein sequence | MDVKFKNPKI INMTESFAQL FEESLKEIET RPGSIVRGVV VAIDKDVVLV DAGLKSESAI
PVEQFKNAQG EIEIQVGDEV DVALDAVEDG FGETLLSREK AKRHEAWLML EKAYEEAATV
TGVINGKVKG GFTVELNGIR AFLPGSLVDV RPVRDTLHLE GKELEFKVIK LDQKRNNVVV
SRRAVIESEN SAERDQLLEN LQEGMEVKGI VKNLTDYGAF VDLGGVDGLL HITDMAWKRV
KHPSEIVNVG DEITVKVLKF DRERTRVSLG LKQLGEDPWV AIAKRYPEGT KLTGRVTNLT
DYGCFVEIEE GVEGLVHVSE MDWTNKNIHP SKVVNVGDVV EVMVLDIDEE RRRISLGLKQ
CKANPWQQFA ETHNKGDRVE GKIKSITDFG IFIGLDGGID GLVHLSDISW NVAGEEAVRE
YKKGDEIAAV VLQVDAERER ISLGVKQLAE DPFNNYLSVN KKGAIVTGKV TAVDAKGATV
ELADGVEGYL RASEASRDRI EDATLVLNVG DEIEAKYTGV DRKNRVVSLS IRAKDEADEK
DAIASVNNKQ EESNFSNAMA EAFKAAKGE
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