| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_2194 |
|---|
| Symbol | oppB |
|---|
| ID | 8119191 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 2518974 |
|---|
| End bp | 2519894 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644852578 |
|---|
| Product | oligopeptide transporter permease |
|---|
| Protein accession | YP_003004516 |
|---|
| Protein GI | 251789795 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0464785 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAAAT TTATTTTCCG TCGTTGCCTG GAAGCAATCC CGACGTTGTT CATCCTGATT
ACTATTTCGT TTTTCATGAT GCGACTGGCC CCGGGAAGTC CGTTTACCGG AGAACGCAAT
CTTCCCCCTG AAGTTATGGC GAATATCGAA GCCAAATACC ATCTGAACGA TCCGATGCTC
AAACAGTATG GTAATTATCT GGTGCAATTG CTGAAAGGCG ATTTCGGTCC GTCTTTTAAG
TACAAAGATT ATTCGGTCAA CGATTTGGTC GTGCGGGCAT TCCCGGTATC GGCCAAATTG
GGGATCGCCG CTTTTCTGCT GGCTGTGGTG CTGGGGGTAA CCTCCGGCGT AATTGCCGCG
TTGAATCAAA ACAGTAAATG GGACTACACG GTAATGGGGT TTGCCATGAC CGGGGTGGTG
ATCCCCAGTT TTGTGGTTGC GCCACTACTG GTGCTGGTCT TCGCGATAAC CCTACGTTGG
TTGCCGGGGG GCGGCTGGAA CGGCGGTGCG CCAAAATACA TCATTCTGCC GATGGTCGCG
CTCTCCTTGT CTTATATCGC CAGTATTGCT CGTATTACCC GTGGCTCAAT GATTGAAGTG
CTGCATTCAA ACTTTATCCG TACCGCACGC GCCAAAGGGC TACCGCTGCG CCGGATTATT
TTGCGTCATG CACTGAAACC TGCGTTGTTG CCGGTGCTTT CTTATATGGG ACCTGCGTTC
GTGGGGATCA TTACGGGCTC CATGGTGATT GAAACCATTT TTGGTTTACC TGGTATTGGT
CAGTTATTTG TTAACGGTGC GTTGAACCGT GACTATTCGC TGGTGCTTAG CCTGACTGTT
TTGGTAGGCG CGCTGACCAT TCTGTTTAAT GCGGTCATCG ATGTGCTGTA TGCGGTCATC
GATCCGAAGA TCCGTTACTA A
|
|---|
| Protein sequence | MLKFIFRRCL EAIPTLFILI TISFFMMRLA PGSPFTGERN LPPEVMANIE AKYHLNDPML
KQYGNYLVQL LKGDFGPSFK YKDYSVNDLV VRAFPVSAKL GIAAFLLAVV LGVTSGVIAA
LNQNSKWDYT VMGFAMTGVV IPSFVVAPLL VLVFAITLRW LPGGGWNGGA PKYIILPMVA
LSLSYIASIA RITRGSMIEV LHSNFIRTAR AKGLPLRRII LRHALKPALL PVLSYMGPAF
VGIITGSMVI ETIFGLPGIG QLFVNGALNR DYSLVLSLTV LVGALTILFN AVIDVLYAVI
DPKIRY
|
|---|
| |