Gene Dd1591_2179 details

Gene Information

• Locus tag: Dd1591_2179
• ID: 8118222
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya zeae Ech1591
• Kingdom: Bacteria
• Replicon accession: NC_012912
• Strand: +
• Start bp: 2506282
• End bp: 2507004
• Gene Length: 723 bp
• Protein Length: 240 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 644852563
• Product: Oligogalacturonate-specific porin
• Protein accession: YP_003004501
• Protein GI: 251789780
• TIGRFAM ID: [TIGR03304] outer membrane insertion C-terminal signal

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.689905
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATTTA AAATTCTGAC ATTGATGGTA GCGTCCGTTG TAAGTATGAG TTCCATGGCA 
GTCACTTTCG ACTATCGCCA TGAGATGAAA GACACACAAA ATGCAGACCA CAGAGATCGC 
CTGTTGATTT CACACCGTTT TGAGAATGGG TTTGGTCTGT CTTCCGAAGT AAAATGGAGA 
CAATCCGGCA GAGACAACAC GCCAAATAAG CCTTACAACG AACAAGTCAG CAACGGCACT 
GAAGTCACTG CCAGCTATCT GTACAAATTC GATAAAATGT TCAGCGTTGA GGCAGGCTTC 
AATCTGGTTT CTAATAGCAC CAGCAACGAA TATCGTCCTT ACCTTAAAGG TGGCGTGAAC 
TTTACCGACG ATATTTACTA CACCCTGCGT TATCGTCCCG CATACAAACG CTTCAGTGAT 
AACATTAACA GAACTGATCC CACCACCATG AAAGGGTATA CCATTACCAG CGTGCTGGGT 
TACAAGTTCC TGAACAACTT CACTGTTGAG TACGAACTGG AATATGTTAA AAACACCAAA 
GCAGGTGACT TTGGTTACAT TTACGACAAT GATAACGACA ACTTCACTCA TGACGTGAAA 
CTGGCTTACA AGATCGACAA AAACTGGACC CCGTATGTTC AGGTTGCCAA TGTTGAAGGC 
CCATCCAAAA CGACTGACGA GCGCCAGACT CGCTACCGTG TTGGTGTACA GTACAACTTC 
TGA 

 

Protein sequence

MKFKILTLMV ASVVSMSSMA VTFDYRHEMK DTQNADHRDR LLISHRFENG FGLSSEVKWR 
QSGRDNTPNK PYNEQVSNGT EVTASYLYKF DKMFSVEAGF NLVSNSTSNE YRPYLKGGVN 
FTDDIYYTLR YRPAYKRFSD NINRTDPTTM KGYTITSVLG YKFLNNFTVE YELEYVKNTK 
AGDFGYIYDN DNDNFTHDVK LAYKIDKNWT PYVQVANVEG PSKTTDERQT RYRVGVQYNF