| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_1965 |
|---|
| Symbol | |
|---|
| ID | 8119282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 2246785 |
|---|
| End bp | 2247504 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644852355 |
|---|
| Product | Oligogalacturonate-specific porin |
|---|
| Protein accession | YP_003004293 |
|---|
| Protein GI | 251789572 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.296834 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATTA AATTATTAAC TTTGGCTGTT GCATCTCTGA TTAGCGTTAA TGCTCTGGCT
GTATCCATCG ATTATCGTCA TGAAATGACG GATAACGCTA AAGTTGGTCA TAAAGACCGT
CTGTTAATCT CTCACCGTTT TGCGAATGGC TTTGGATTAT CCTCCGAAGT AAAATGGGCT
CAATCCGGCA GGGACGGTAA CCCAAACAGA CCATTTAGCG AACAGGTCAG CAACGGCACC
GAAGTTGTCG CCAGCTACGT GTATAAATTC AACGACGTTT TTTCTATCGA ACCGGGATTT
TCTTTAGATT CAACATCTTC CAGTAATAAT TATCGCCCCT ATCTTCGCGG CCGGGCTAAT
GTGACCGATG ATTTGTCTGT CGCCTTACGT TATCGCCCTT ACTTTAAGCG CAATAGCGGA
AATATCAGGA ATACGAATGG CGATAGTACA ATGGACAAGG GCTATACCCT GACCGGTAAT
ATCGACTATA ACTTCCTGGA TGTTTATACC CTCGGTTACG AGCTGGAATA CAAGAAAGGC
ACCTCCGGCG AAACCATCCT TTCTGACAAC GATGATTATG ACATCACCCA TGAAGTGAAG
TTGTCTTACA AGTGGGACAA AAACTGGAAA CCATATGTTG CACTCGGCAA CGTTTCTGGT
TCTGATACTA CTGACGAACG CCAGACCCGT TACCGTGTAG GCGTGCAATA TAGCTTCTAA
|
|---|
| Protein sequence | MKIKLLTLAV ASLISVNALA VSIDYRHEMT DNAKVGHKDR LLISHRFANG FGLSSEVKWA
QSGRDGNPNR PFSEQVSNGT EVVASYVYKF NDVFSIEPGF SLDSTSSSNN YRPYLRGRAN
VTDDLSVALR YRPYFKRNSG NIRNTNGDST MDKGYTLTGN IDYNFLDVYT LGYELEYKKG
TSGETILSDN DDYDITHEVK LSYKWDKNWK PYVALGNVSG SDTTDERQTR YRVGVQYSF
|
|---|
| |