| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_1946 |
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| Symbol | |
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| ID | 8119263 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya zeae Ech1591 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012912 |
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| Strand | + |
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| Start bp | 2226407 |
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| End bp | 2228575 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644852336 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_003004274 |
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| Protein GI | 251789553 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.146362 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCGAG CCCCAGCAAA TAAAGATGAG AAAAGCCGAC TTGCGGCATT ACAAGAGTAC
GGTATCAGCA AACCGCTGTC TGATCCTGGT TTTGACAATC TGATCAATTT GGCTGCCAAC
GTTTTCAATG TCCCTATTGT ATTGATTTCG TTGGTAGAGA AAGAGCGACA GCTGTTTGCT
GCTAGCATTG GGATGCCGGT ATGTGAAACG TCACGAGACG AATCTTTCTG TGCACATGCG
ATTCTCAAGA AACGGATCAT GGTGATCCCC GATACGCGCA AAGATCCCCG CTTCAAAGAT
AACCCGTTGG TCATCGGAGA GCCGCACATT CGCTTTTATG CCGGTATCCC CTTACGGACG
CCTAGCGGGT TTCCTATCGG AGTGCTGTGC ATTATCGATA ACAAACCCCG CGCTTCTCTA
AGTGCCCGCG ATGCGCATAA CTTGCAGGAT TTTGCCGCAC TGGTGATGGA CAAGCTGGAA
ATGCGGCGTC TGGACCTGGC CCGTCGTGCC AGTCAGGCCC GTTTTGAGAG TATTGCCGAA
TCGTCGCCTG ATGCCATTCT CTGCGTTAAT GACAAAGGGA CGATCACTTT CTGGAACGAG
TCGGCAGAGA AAATGCTGGA GTACAGCCGT GATCAGATCA TCGGTGAACA TATCAGCAGC
ATCGTTCCAG ATATGTTTGT TGTGCAGTTG CATCACCTGG CAACGGACAA GACCGCGATT
TTTAAAGGCA GCTCGATTGA ATTAGAAACG CGAGCCTTGC CTGGCACCAT GATTCCAACC
GAGCTGACGG TATCCATGTG GCATGACCAC AATCAGACGC GTTATGGCAT CATTTTGCGT
GATACGACGG AAAGACAACG CTACGAAGAA CGGTTATTCC TGCAGGCGCA CCGAGATCCG
CTTACTGGGT TGGCTAACCG CACGTTGCTG ACGTCTACGT TGGATCAGGT ACTGAAAAAC
GGCGAGCCGG CGGCCATCAT GATTATTGAT CTGGATGGTT TCAAAGATAT CAACGATAGC
CTCGGACACG CCAGCGGCGA TGAAATTTTG TCCAGTGTCT CCAGGCGGTT ACAGGATAAC
GTCCAGTCCG GCGATCTGGT TGCCCGCATG GGCGGGGATG AGTTCGCTAT TTTGTTGCCG
AAGCAGAATG ATAAAGAGCG GGTAGCGAAA CTGGCGGAAA AAATCATCCA TGATATTTCG
CAAGCCGTGC TTGTCGATAA CAAACAAATC AACACCAGCG CCAGTATTGG ACTGGTGATG
TACCCGACGC ATGGGACAAC CGTGCAAGAC TTACTCACCA GTGCAGATTT GGCGTTGTAT
CAAGCGAAAG CGGATGGGCG TAACTGCTAT CGCTTTTTTA CCCGTGAGTT AAGAGAGGTT
TTTCAGGCTC GCCACGCTTT CCAACTGGAA TTCATTAGGG CGTATGAGCA GGAAGAGTTT
GAGGTGTTTT ATCAGCCTCA GGTGAGTCTG GTCAACAGTA AGATAGTGGG GGCTGAGGCG
CTGCTGCGCT GGCGTCATCC CTATAAAGGC TTACTAGGAC CGGCTGCATT TATGTCTGCA
TTGGAGCGCG GTCCGTGGGC AGAGCGCATT GGCGATTGGG TGGTCCAATC CGCTTGCCAG
CAGGCATCTG AGTGGTGCCG GGCCGGGGCG AGAAATTTCC GCATTAGTAT CAATTTGTTT
GCCGCACAGT TCCGTTCGGG CCGTTTAGCT CAGAAAATTA AAGATGTTCT GATGCAAACA
GGGCTTAAAC CCGGTGCGCT GGAGCTGGAA ATTACAGAGA ACATCATATT GCGACATGAC
GAAAGTATGA TGAAACCGCT TAATGAACTG CGTAGCAGCG GTATTAGCAT TGCTTTTGAT
GACTACGGTA CGGGGTACGC TTCACTTAGC ATGTTGAAGC ACTACCCGGT TACCCGGCTT
AAGATCGATC AAACTTTTGT TCGAGCGATG TGTGAGTCGG CACCGGATGC AGCGATTGTT
CGTGCGATCC TTTATTTAGG GAAAAGCTTT GGTTTAGATG TGATTGCCGA AGGGGTAGAA
ACGCAAGAAC AGTGCGAAAG ATTACTCAAT AAAGGGTGTG AGCAAGCGCA GGGGTATCTG
TTTGGGCGCC CAATGCCTGC CGCGGAGTTT GAGAAATTAC TGGAACTGGA GAACGCCCCT
TTGGCCTGA
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| Protein sequence | MSRAPANKDE KSRLAALQEY GISKPLSDPG FDNLINLAAN VFNVPIVLIS LVEKERQLFA
ASIGMPVCET SRDESFCAHA ILKKRIMVIP DTRKDPRFKD NPLVIGEPHI RFYAGIPLRT
PSGFPIGVLC IIDNKPRASL SARDAHNLQD FAALVMDKLE MRRLDLARRA SQARFESIAE
SSPDAILCVN DKGTITFWNE SAEKMLEYSR DQIIGEHISS IVPDMFVVQL HHLATDKTAI
FKGSSIELET RALPGTMIPT ELTVSMWHDH NQTRYGIILR DTTERQRYEE RLFLQAHRDP
LTGLANRTLL TSTLDQVLKN GEPAAIMIID LDGFKDINDS LGHASGDEIL SSVSRRLQDN
VQSGDLVARM GGDEFAILLP KQNDKERVAK LAEKIIHDIS QAVLVDNKQI NTSASIGLVM
YPTHGTTVQD LLTSADLALY QAKADGRNCY RFFTRELREV FQARHAFQLE FIRAYEQEEF
EVFYQPQVSL VNSKIVGAEA LLRWRHPYKG LLGPAAFMSA LERGPWAERI GDWVVQSACQ
QASEWCRAGA RNFRISINLF AAQFRSGRLA QKIKDVLMQT GLKPGALELE ITENIILRHD
ESMMKPLNEL RSSGISIAFD DYGTGYASLS MLKHYPVTRL KIDQTFVRAM CESAPDAAIV
RAILYLGKSF GLDVIAEGVE TQEQCERLLN KGCEQAQGYL FGRPMPAAEF EKLLELENAP
LA
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